Os09g0321500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0321500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.28 | 0.56 | 9.98 | -0.524 | 1.56 | -1.36 | -1.6 | -0.996 | -0.0748 | 22.3 | 25.1 | 257 | 3.37 | 7.87 |
| 142.59 | 0.556 | 10 | -0.594 | 1.58 | -1.38 | -0.8 | -- | -0.09 | 22.1 | 25.08 | 241 | 3.88 | 7.35 |
| 144.69 | 0.56 | 9.98 | -0.582 | 1.58 | -1.38 | -- | 0.272 | -0.106 | 22.2 | 25.04 | 241 | 3.77 | 7.58 |
| 144.77 | 0.56 | 9.99 | -0.584 | 1.59 | -1.37 | -- | -- | -0.0944 | 22 | 25.07 | 241 | 3.88 | 7.43 |
| 169.65 | 0.607 | 9.92 | -0.452 | -- | -1.98 | -- | 0.725 | -0.0589 | -- | 29.56 | 163 | 3.88 | 8.71 |
| 187.35 | 0.642 | 9.97 | -0.439 | 2.37 | -- | -1.03 | -- | 0.0927 | 21.7 | -- | -- | -- | -- |
| 191.36 | 0.648 | 9.97 | -0.399 | 2.37 | -- | -- | -- | 0.0951 | 21.7 | -- | -- | -- | -- |
| 167.51 | 0.603 | 9.89 | -0.514 | -- | -2.01 | -- | -- | 0.0725 | -- | 29.59 | 157 | 3.87 | 8.96 |
| 153.82 | 0.578 | 9.98 | -- | 1.58 | -1.38 | -- | -- | -0.0298 | 22 | 25 | 239 | 3.93 | 7.23 |
| 526.42 | 1.07 | 9.91 | -0.377 | -- | -- | -- | -- | 0.0917 | -- | -- | -- | -- | -- |
| 195.54 | 0.654 | 9.96 | -- | 2.37 | -- | -- | -- | 0.139 | 21.7 | -- | -- | -- | -- |
| 174.27 | 0.615 | 9.9 | -- | -- | -2.05 | -- | -- | 0.0839 | -- | 29.6 | 157 | 3.87 | 8.98 |
| 530.17 | 1.07 | 9.9 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 2 | 143.80 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 29 | 150.40 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 35 | 151.02 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 9 |
| 38 | 151.29 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 46 | 151.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 48 | 151.90 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 49 | 151.92 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 50 | 151.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 56 | 152.24 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 137 | 154.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 141 | 155.02 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 155 | 155.32 | radiation | 10 | 10 | < th | dose dependent | sin | 7 | NA |
| 172 | 155.74 | radiation | 1 | 30 | > th | dose independent | sin | 6 | NA |
| 175 | 155.77 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 194 | 156.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 196 | 156.25 | radiation | 1 | 30 | < th | dose independent | sin | 5 | NA |
| 270 | 157.30 | radiation | 1 | 30 | > th | dose independent | sin | 3 | NA |
| 327 | 158.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 358 | 158.82 | radiation | 40 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 378 | 158.83 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 382 | 158.86 | radiation | 40 | 270 | > th | dose dependent | sin | 11 | NA |
| 387 | 158.89 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 9 |
| 388 | 158.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 402 | 159.06 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 422 | 159.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 451 | 159.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 558 | 160.27 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 2 |
| 573 | 160.40 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 591 | 160.49 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 663 | 161.00 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 737 | 161.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 741 | 161.49 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 773 | 161.55 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 11 |
| 821 | 161.73 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 896 | 162.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 949 | 162.25 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 3 |
| 965 | 162.32 | radiation | 1 | 30 | < th | dose independent | rect. | 1 | 13 |
| 975 | 162.37 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 3 |