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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0321200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carotenoid oxygenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.032) R2 : 5.81e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.011 (0.0674) R2dN8 : 7.5e-05 R2N8 : 5.81e-05
σ : 0.603
deviance : 167.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.78 0.59 2.82 -0.173 0.233 0.135 -1.51 -1.53 -0.0497 18.4 2.952 136 -- --
163.47 0.6 2.78 -0.136 0.0627 -0.0769 -0.777 -- -0.0264 21.6 2.952 136 -- --
162.23 0.593 2.81 -0.143 0.171 0.0849 -- -0.956 -0.0313 18.2 3 130 -- --
163.58 0.596 2.78 -0.0575 0.0646 -0.29 -- -- -0.0765 21.5 2 2970 -- --
163.3 0.595 2.8 -0.088 -- 0.00919 -- -0.923 -0.0191 -- 3.4 136 -- --
163.95 0.6 2.78 -0.161 0.0778 -- -0.805 -- -0.0257 20.9 -- -- -- --
166.01 0.603 2.78 -0.131 0.1 -- -- -- -0.0238 18.8 -- -- -- --
163.1 0.595 2.8 -0.00136 -- -0.478 -- -- -0.0894 -- 2.3 2807 -- --
163.18 0.595 2.79 -- 0.0448 -0.42 -- -- -0.08 20.9 2.2 3085 -- --
166.54 0.603 2.78 -0.133 -- -- -- -- -0.0258 -- -- -- -- --
166.47 0.604 2.78 -- 0.102 -- -- -- -0.00924 18.8 -- -- -- --
162.53 0.594 2.82 -- -- -0.601 -- -- -0.195 -- 2.001 2812 -- --
167.01 0.603 2.78 -- -- -- -- -- -0.011 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.50 temperature 20.0 720 < th dose independent rect. 15 1
5 144.08 temperature 20.0 720 < th dose dependent rect. 15 1
21 146.91 precipitation 0.1 10 > th dose independent rect. 21 5
25 146.91 precipitation 0.1 10 > th dose dependent rect. 21 5
39 147.76 precipitation 0.1 90 > th dose independent rect. 1 2
40 147.76 precipitation 0.1 90 > th dose dependent rect. 1 2
43 147.78 precipitation 0.1 10 > th dose independent rect. 1 1
53 147.78 precipitation 0.1 10 > th dose dependent rect. 1 1
96 150.21 wind 3.0 90 < th dose independent rect. 15 7
151 151.75 humidity 90.0 1440 < th dose independent rect. 16 1
154 152.07 temperature 15.0 1440 < th dose independent rect. 2 1
155 152.21 temperature 20.0 90 < th dose dependent rect. 21 1
162 152.31 temperature 20.0 90 < th dose independent rect. 20 1
167 152.40 wind 3.0 90 < th dose independent rect. 11 11
168 152.43 temperature 15.0 1440 < th dose dependent rect. 2 1
174 152.71 temperature 20.0 10 < th dose dependent rect. 2 1
179 152.88 wind 3.0 90 < th dose dependent rect. 15 7
184 153.23 humidity 90.0 720 > th dose dependent rect. 17 1
192 153.37 humidity 90.0 720 > th dose independent rect. 16 5
196 153.42 humidity 90.0 720 > th dose dependent rect. 17 3
207 153.57 radiation 10.0 10 > th dose independent rect. 16 2
229 153.73 temperature 20.0 720 > th dose independent rect. 13 6
233 153.96 temperature 15.0 1440 > th dose independent rect. 2 3
234 153.99 wind 3.0 90 < th dose dependent rect. 11 11
237 154.02 wind 3.0 10 > th dose independent rect. 2 1
239 154.04 humidity 90.0 720 > th dose dependent rect. 16 5
248 154.29 radiation 10.0 10 > th dose dependent rect. 16 2
263 154.37 humidity 90.0 720 < th dose independent rect. 16 5
273 154.53 humidity 90.0 1440 > th dose independent rect. 16 1
312 155.10 wind 3.0 90 < th dose independent rect. 24 23
318 155.17 wind 5.0 30 > th dose independent rect. 12 1
321 155.23 wind 3.0 90 < th dose independent rect. 8 14
330 155.30 wind 3.0 90 > th dose independent rect. 11 14
333 155.32 temperature 15.0 1440 < th dose dependent rect. 4 1
346 155.44 temperature 20.0 720 > th dose independent rect. 16 2
350 155.45 wind 3.0 720 > th dose dependent rect. 2 2
370 155.63 wind 3.0 720 > th dose independent rect. 2 1
399 155.77 wind 3.0 30 > th dose dependent rect. 12 1
409 155.86 wind 5.0 720 > th dose independent rect. 2 3
411 155.87 wind 3.0 90 > th dose independent rect. 11 19
416 155.92 humidity 60.0 30 < th dose independent rect. 15 2
420 155.95 wind 3.0 90 < th dose independent sin 18 NA
425 155.96 humidity 90.0 720 > th dose dependent rect. 19 1
426 155.96 humidity 60.0 30 < th dose dependent rect. 15 2
452 156.12 temperature 15.0 1440 > th dose independent rect. 15 14
457 156.14 temperature 20.0 90 < th dose dependent rect. 16 6
459 156.15 radiation 30.0 30 > th dose dependent rect. 12 1
468 156.20 radiation 40.0 30 > th dose independent rect. 12 1
483 156.27 wind 9.0 30 < th dose independent rect. 13 23
488 156.28 temperature 15.0 4320 < th dose dependent rect. 15 3
495 156.30 temperature 15.0 4320 < th dose independent rect. 15 3
519 156.33 temperature 15.0 1440 > th dose independent rect. 18 11
556 156.35 wind 5.0 90 < th dose dependent rect. 24 23
560 156.37 wind 3.0 90 < th dose independent rect. 14 13
608 156.46 wind 3.0 90 > th dose independent sin 19 NA
609 156.46 atmosphere 1000.0 30 > th dose dependent rect. 12 1
611 156.47 atmosphere 1005.0 30 > th dose independent rect. 12 1
614 156.49 wind 3.0 1440 < th dose independent rect. 1 3
616 156.49 wind 5.0 1440 > th dose independent rect. 1 7
618 156.49 temperature 15.0 1440 > th dose independent rect. 2 11
622 156.51 temperature 25.0 30 > th dose dependent rect. 12 1
634 156.56 humidity 70.0 30 < th dose independent rect. 12 1
636 156.56 wind 3.0 90 > th dose independent rect. 10 23
650 156.57 wind 5.0 1440 < th dose independent rect. 1 5
653 156.57 wind 5.0 720 < th dose independent rect. 23 10
657 156.58 wind 5.0 1440 > th dose dependent rect. 1 7
671 156.64 temperature 15.0 4320 < th dose independent rect. 3 17
717 156.68 humidity 50.0 14400 > th dose independent rect. 18 12
751 156.70 temperature 20.0 90 < th dose independent rect. 1 1
767 156.72 wind 5.0 1440 > th dose independent rect. 24 9
769 156.72 wind 3.0 90 < th dose dependent rect. 20 1
773 156.73 wind 5.0 1440 < th dose independent rect. 1 7
778 156.75 wind 3.0 90 < th dose independent rect. 20 1
779 156.75 temperature 15.0 4320 > th dose independent rect. 4 8
787 156.77 radiation 10.0 30 > th dose independent rect. 12 1
807 156.78 wind 3.0 90 < th dose independent rect. 19 3
814 156.79 wind 9.0 30 < th dose independent rect. 12 1
815 156.79 temperature 10.0 30 > th dose independent rect. 12 1
819 156.79 atmosphere 1015.0 30 < th dose independent rect. 12 1
821 156.79 precipitation 0.1 30 < th dose independent rect. 12 1
824 156.79 temperature 10.0 30 > th dose independent rect. 13 23
825 156.79 precipitation 0.1 30 < th dose dependent rect. 12 1
828 156.81 radiation 1.0 90 < th dose independent rect. 8 3
830 156.81 temperature 15.0 4320 > th dose independent rect. 15 5
835 156.81 radiation 1.0 90 < th dose dependent rect. 8 3
859 156.85 temperature 20.0 90 < th dose independent rect. 16 6
866 156.86 humidity 90.0 30 > th dose independent rect. 1 2
867 156.86 temperature 15.0 4320 > th dose independent rect. 17 3
870 156.87 humidity 60.0 30 > th dose independent rect. 12 1
885 156.89 wind 5.0 1440 > th dose independent rect. 23 13
890 156.90 precipitation 0.1 10 > th dose independent rect. 1 7
920 156.91 precipitation 0.1 10 > th dose dependent rect. 1 7
962 156.94 wind 5.0 90 < th dose dependent rect. 8 14
990 156.97 temperature 10.0 1440 > th dose independent rect. 13 1
995 156.97 atmosphere 995.0 1440 > th dose independent rect. 13 1