Os09g0319800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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Os09g0319800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.07 | 0.461 | 6.02 | 8.96 | 0.25 | 115 | -0.418 | 346 | 0.0197 | 4.36 | 1 | 7 | 11 | 1 |
| 147.55 | 0.57 | 3.08 | -0.292 | 0.358 | -0.298 | -1.14 | -- | -0.0669 | 4.92 | 1 | 7 | 11 | 1 |
| 150.87 | 0.572 | 3.34 | 0.482 | 0.351 | 118 | -- | 356 | -0.0614 | 4.81 | 4.542 | 6 | 11.8 | 1.2 |
| 150.87 | 0.576 | 3.08 | -0.289 | 0.35 | -0.344 | -- | -- | -0.0615 | 4.81 | 2.223 | 11 | 11 | 1.18 |
| 157.36 | 0.584 | 3.34 | 0.495 | -- | 118 | -- | 356 | -0.0527 | -- | 4.513 | 8 | 11.8 | 1.19 |
| 147.64 | 0.57 | 3.08 | -0.288 | 0.359 | -- | -1.14 | -- | -0.0656 | 4.9 | -- | -- | -- | -- |
| 150.99 | 0.575 | 3.08 | -0.285 | 0.351 | -- | -- | -- | -0.06 | 4.79 | -- | -- | -- | -- |
| 156.84 | 0.583 | 3.09 | -0.274 | -- | -0.167 | -- | -- | -0.0624 | -- | 24.56 | 13 | 11 | 2.2 |
| 153.04 | 0.576 | 3.07 | -- | 0.343 | -0.154 | -- | -- | -0.0271 | 4.84 | 12.14 | 16 | 11 | 1.1 |
| 157.52 | 0.586 | 3.08 | -0.272 | -- | -- | -- | -- | -0.0509 | -- | -- | -- | -- | -- |
| 153.12 | 0.579 | 3.07 | -- | 0.346 | -- | -- | -- | -0.0283 | 4.81 | -- | -- | -- | -- |
| 155.11 | 0.58 | 3.07 | -- | -- | -0.162 | -- | -- | -0.0486 | -- | 69.42 | 3599 | 10.2 | 3.98 |
| 159.46 | 0.589 | 3.08 | -- | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 96.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 110.56 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 5 | 111.02 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 6 | 111.12 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 16 | 113.14 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 17 | 113.43 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 18 | 113.59 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 7 |
| 23 | 113.83 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 23 | 11 |
| 25 | 113.87 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 42 | 114.45 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 115.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 77 | 115.61 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 86 | 115.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 87 | 115.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 150 | 116.92 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 303 | 120.28 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 326 | 120.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 327 | 120.82 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 370 | 121.56 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 13 | NA |
| 402 | 122.29 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 14 | NA |
| 453 | 123.29 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 474 | 123.60 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 523 | 124.28 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 525 | 124.28 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 527 | 124.28 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 578 | 124.28 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 580 | 124.28 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 582 | 124.28 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 638 | 124.35 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 670 | 124.88 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 681 | 125.01 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 703 | 125.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 776 | 125.99 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 871 | 126.73 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 901 | 126.99 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 957 | 127.42 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 990 | 127.65 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |