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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0317600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0608) R2 : 0.236
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.85 (0.176) R2dC : 0.0486 R2C : 0.0986
β3 : 2.72 (0.389) R2dE : 0.101 R2E : 0.154
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.538 (0.128) R2dN8 : 0.0384 R2N8 : 0.0266
σ : 1.14
deviance : 598.63
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_____
C
peak time of C : 6.87
E
wheather : wind
threshold : 2.622
memory length : 138
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.26
open length of G : 0.733

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
592.3 1.14 3.87 -0.292 0.83 3.13 0.26 -4.39 -0.575 6.88 2.558 139 5.23 0.768
597.79 1.14 3.86 -0.2 0.833 3.09 -0.397 -- -0.529 6.85 2.441 138 5.24 0.763
591.22 1.13 3.86 -0.279 0.854 3.36 -- -4.7 -0.546 6.82 2.334 137 5.27 0.746
597.72 1.14 3.85 -0.176 0.836 2.84 -- -- -0.526 6.78 2.527 139 5.27 0.75
620.72 1.16 3.87 -0.27 -- 3.76 -- -4.81 -0.503 -- 2.504 144 5.27 0.733
661.9 1.21 3.84 -0.121 1.39 -- 0.0065 -- -0.55 6.65 -- -- -- --
661.9 1.2 3.84 -0.121 1.39 -- -- -- -0.55 6.65 -- -- -- --
626.48 1.17 3.88 -0.208 -- 3.29 -- -- -0.552 -- 2.879 145 5.24 0.75
598.63 1.14 3.85 -- 0.85 2.72 -- -- -0.538 6.87 2.622 138 5.26 0.733
762.62 1.29 3.87 -0.0879 -- -- -- -- -0.522 -- -- -- -- --
662.29 1.2 3.84 -- 1.39 -- -- -- -0.537 6.66 -- -- -- --
627.66 1.17 3.87 -- -- 3.25 -- -- -0.534 -- 2.892 145 5.24 0.752
762.83 1.29 3.87 -- -- -- -- -- -0.512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 600.21 radiation 10.0 30 < th dose independent rect. 5 10
3 601.00 radiation 10.0 30 < th dose independent rect. 5 4
7 607.49 radiation 10.0 30 < th dose independent rect. 5 12
8 607.69 wind 3.0 90 < th dose dependent rect. 5 1
13 610.06 radiation 10.0 30 < th dose independent rect. 5 14
14 610.26 radiation 10.0 90 < th dose dependent rect. 5 4
15 611.47 temperature 20.0 270 > th dose dependent rect. 5 1
20 612.48 radiation 10.0 30 < th dose independent rect. 5 17
21 612.49 humidity 80.0 270 > th dose independent rect. 5 1
22 612.55 humidity 60.0 30 > th dose dependent rect. 5 14
25 612.79 humidity 60.0 30 > th dose dependent rect. 5 5
32 613.54 radiation 10.0 30 < th dose independent rect. 5 21
33 613.55 temperature 20.0 270 > th dose independent rect. 5 1
43 614.91 atmosphere 1010.0 30 < th dose independent rect. 5 2
47 615.25 radiation 1.0 90 > th dose independent rect. 4 2
57 615.36 humidity 80.0 30 > th dose independent rect. 5 5
58 615.37 humidity 60.0 30 > th dose dependent rect. 5 12
59 615.40 atmosphere 1010.0 30 < th dose independent rect. 5 5
82 616.42 humidity 60.0 30 > th dose dependent rect. 5 10
88 616.73 atmosphere 1015.0 90 < th dose dependent rect. 5 2
96 617.17 radiation 10.0 90 < th dose dependent rect. 5 8
105 617.41 wind 3.0 90 < th dose independent rect. 5 1
122 618.07 humidity 70.0 270 > th dose dependent rect. 5 1
123 618.09 humidity 80.0 270 > th dose independent rect. 2 7
138 618.50 radiation 10.0 90 < th dose dependent rect. 5 10
154 619.04 humidity 80.0 270 > th dose independent rect. 3 4
158 619.12 humidity 80.0 10 > th dose independent rect. 5 3
206 620.17 precipitation 0.1 90 < th dose independent rect. 6 23
207 620.17 precipitation 0.1 90 < th dose dependent rect. 6 23
227 620.90 humidity 50.0 270 > th dose dependent rect. 2 15
234 621.05 wind 7.0 270 < th dose independent rect. 6 22
240 621.28 radiation 10.0 270 < th dose dependent rect. 3 14
243 621.33 radiation 10.0 90 < th dose dependent rect. 5 12
252 621.60 radiation 10.0 270 < th dose independent rect. 5 1
257 621.66 wind 1.0 270 > th dose independent rect. 6 22
260 621.68 humidity 80.0 10 > th dose independent rect. 5 15
264 621.71 temperature 20.0 270 > th dose independent rect. 3 4
289 622.08 humidity 70.0 270 > th dose dependent rect. 2 8
295 622.17 wind 7.0 270 < th dose independent rect. 7 20
301 622.29 humidity 80.0 10 > th dose independent rect. 5 9
310 622.42 temperature 15.0 270 > th dose dependent rect. 3 4
321 622.62 atmosphere 1015.0 30 < th dose dependent rect. 5 5
353 623.03 temperature 10.0 90 > th dose independent rect. 5 1
355 623.03 temperature 30.0 90 < th dose independent rect. 5 1
356 623.03 humidity 50.0 90 > th dose independent rect. 5 1
359 623.03 atmosphere 995.0 90 > th dose independent rect. 5 1
365 623.03 temperature 10.0 90 > th dose independent rect. 6 23
369 623.06 precipitation 0.1 90 < th dose independent rect. 5 1
370 623.06 precipitation 0.1 90 < th dose dependent rect. 5 1
398 623.65 wind 7.0 30 < th dose independent rect. 10 19
401 623.69 humidity 80.0 270 > th dose independent rect. 2 15
432 623.94 radiation 40.0 90 < th dose dependent rect. 5 1
446 624.08 radiation 10.0 30 < th dose independent sin 1 NA
507 624.67 radiation 10.0 270 < th dose dependent rect. 3 8
532 624.87 temperature 20.0 30 > th dose independent rect. 5 5
565 625.15 atmosphere 1015.0 270 < th dose dependent rect. 3 4
587 625.40 temperature 20.0 270 > th dose independent rect. 2 6
600 625.48 radiation 20.0 30 < th dose dependent rect. 5 17
608 625.62 humidity 80.0 270 < th dose independent rect. 3 8
620 625.74 radiation 10.0 270 < th dose dependent sin 2 NA
627 625.81 radiation 10.0 30 < th dose independent rect. 13 20
643 626.03 precipitation 0.1 30 < th dose independent rect. 10 19
644 626.03 precipitation 0.1 30 < th dose dependent rect. 10 19
833 627.45 radiation 1.0 90 > th dose dependent rect. 4 2
845 627.48 wind 9.0 10 < th dose dependent rect. 7 22
859 627.57 radiation 20.0 30 < th dose dependent rect. 5 21
860 627.59 temperature 10.0 30 > th dose dependent rect. 5 5
872 627.72 humidity 80.0 90 > th dose independent rect. 21 7
894 627.91 wind 7.0 30 < th dose independent rect. 5 5
903 627.94 temperature 10.0 30 > th dose independent rect. 5 5
906 627.94 atmosphere 995.0 30 > th dose independent rect. 5 5
909 627.94 temperature 10.0 30 > th dose independent rect. 10 19
916 627.99 wind 9.0 10 < th dose dependent rect. 10 19
922 628.05 humidity 90.0 270 < th dose independent rect. 23 13
925 628.06 wind 1.0 270 > th dose independent rect. 22 14
932 628.11 radiation 1.0 30 < th dose dependent sin 10 NA
940 628.14 temperature 20.0 30 > th dose independent rect. 5 19
967 628.27 precipitation 0.1 30 < th dose independent rect. 5 5
968 628.27 precipitation 0.1 30 < th dose dependent rect. 5 5