Os09g0314400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os09g0314400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.75 | 0.375 | 6.54 | 0.2 | 0.279 | -0.675 | -0.774 | 2.61 | -0.0885 | 9.18 | 57.76 | 85 | -- | -- |
| 64.03 | 0.373 | 6.52 | 0.248 | 0.31 | -1.26 | -0.494 | -- | -0.0532 | 9.31 | 58.55 | 292 | -- | -- |
| 63.22 | 0.37 | 6.54 | 0.181 | 0.258 | -0.572 | -- | 2.52 | -0.0953 | 10.4 | 58.19 | 504 | -- | -- |
| 64.64 | 0.374 | 6.53 | 0.18 | 0.283 | -1.54 | -- | -- | -0.09 | 9.99 | 58.88 | 289 | -- | -- |
| 67.12 | 0.382 | 6.54 | 0.142 | -- | -0.54 | -- | 2.41 | -0.086 | -- | 58.39 | 507 | -- | -- |
| 73.76 | 0.403 | 6.52 | 0.304 | 0.21 | -- | -0.635 | -- | -0.0405 | 7.72 | -- | -- | -- | -- |
| 74.6 | 0.404 | 6.52 | 0.291 | 0.216 | -- | -- | -- | -0.038 | 9.02 | -- | -- | -- | -- |
| 67.81 | 0.384 | 6.54 | 0.102 | -- | -1.35 | -- | -- | -0.0914 | -- | 65.69 | 747 | -- | -- |
| 65.16 | 0.376 | 6.53 | -- | 0.292 | -1.53 | -- | -- | -0.102 | 10.4 | 58.58 | 294 | -- | -- |
| 77.28 | 0.411 | 6.52 | 0.291 | -- | -- | -- | -- | -0.0367 | -- | -- | -- | -- | -- |
| 76.84 | 0.41 | 6.52 | -- | 0.216 | -- | -- | -- | -0.0705 | 8.92 | -- | -- | -- | -- |
| 67.87 | 0.384 | 6.55 | -- | -- | -1.41 | -- | -- | -0.123 | -- | 66.76 | 747 | -- | -- |
| 79.52 | 0.416 | 6.53 | -- | -- | -- | -- | -- | -0.069 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 12 | 61.77 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 16 | 61.95 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 32 | 62.63 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 68 | 63.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 69 | 63.75 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 83 | 63.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 6 |
| 107 | 64.20 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 158 | 64.63 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 178 | 64.79 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 202 | 64.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 243 | 65.25 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 248 | 65.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 259 | 65.33 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 270 | 65.37 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 276 | 65.40 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 281 | 65.43 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 288 | 65.45 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 291 | 65.46 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 309 | 65.51 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 323 | 65.55 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 347 | 65.62 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 373 | 65.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 381 | 65.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 385 | 65.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 399 | 65.76 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 409 | 65.79 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 421 | 65.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 424 | 65.84 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 425 | 65.84 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 454 | 65.91 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 473 | 65.91 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 502 | 65.93 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 506 | 65.95 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 567 | 66.08 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 23 |
| 571 | 66.09 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 611 | 66.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 615 | 66.17 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 627 | 66.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 632 | 66.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 696 | 66.28 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 701 | 66.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 769 | 66.39 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 779 | 66.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 18 |
| 782 | 66.41 | radiation | 40 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 793 | 66.43 | radiation | 20 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 807 | 66.46 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 826 | 66.50 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 860 | 66.52 | radiation | 40 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 868 | 66.53 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 927 | 66.61 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 928 | 66.62 | radiation | 40 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 932 | 66.62 | radiation | 40 | 90 | > th | dose dependent | sin | 0 | NA |
| 934 | 66.62 | radiation | 40 | 90 | > th | dose dependent | no | NA | NA |
| 936 | 66.62 | radiation | 40 | 90 | > th | dose dependent | rect. | 8 | 6 |