Os09g0314100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0314100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.57 | 0.28 | 10.6 | 1.52 | 0.565 | -1.08 | 0.815 | 0.119 | 0.505 | 18.1 | 9.027 | 20 | -- | -- |
| 35.58 | 0.278 | 10.6 | 1.51 | 0.566 | -1.08 | 0.83 | -- | 0.501 | 18 | 8.921 | 19 | -- | -- |
| 37.12 | 0.284 | 10.6 | 1.54 | 0.56 | -1.04 | -- | 0.393 | 0.512 | 18.1 | 6.964 | 19 | -- | -- |
| 37.25 | 0.284 | 10.6 | 1.49 | 0.563 | -1.03 | -- | -- | 0.497 | 18.1 | 4.493 | 19 | -- | -- |
| 51.53 | 0.336 | 10.6 | 1.48 | -- | -0.736 | -- | 0.519 | 0.461 | -- | 14.5 | 3 | -- | -- |
| 46.69 | 0.32 | 10.6 | 1.3 | 0.465 | -- | 0.476 | -- | 0.351 | 20.1 | -- | -- | -- | -- |
| 47.36 | 0.322 | 10.6 | 1.29 | 0.464 | -- | -- | -- | 0.351 | 20.2 | -- | -- | -- | -- |
| 51.75 | 0.337 | 10.6 | 1.41 | -- | -0.726 | -- | -- | 0.441 | -- | 14.32 | 5 | -- | -- |
| 89.38 | 0.443 | 10.6 | -- | 0.47 | -0.308 | -- | -- | 0.253 | 19.5 | 20.41 | 24 | -- | -- |
| 59.22 | 0.36 | 10.6 | 1.28 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 90.93 | 0.446 | 10.6 | -- | 0.457 | -- | -- | -- | 0.207 | 20.4 | -- | -- | -- | -- |
| 101.08 | 0.47 | 10.6 | -- | -- | -0.253 | -- | -- | 0.238 | -- | 19.71 | 15 | -- | -- |
| 102.6 | 0.473 | 10.6 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 2 | 32.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 32.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 4 | 32.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 32.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 32.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 7 | 32.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 12 | 33.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 15 | 33.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 21 | 33.62 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 34 | 33.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 41 | 33.94 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 50 | 34.08 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 51 | 34.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 56 | 34.12 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 60 | 34.15 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 68 | 34.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 69 | 34.28 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 74 | 34.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 83 | 34.43 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 89 | 34.52 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 90 | 34.53 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 92 | 34.54 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 94 | 34.58 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 100 | 34.59 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 103 | 34.62 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 124 | 34.70 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 155 | 34.81 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 175 | 34.83 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 179 | 34.84 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 221 | 34.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 241 | 34.98 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 276 | 35.04 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 277 | 35.04 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 295 | 35.06 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 316 | 35.08 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 352 | 35.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 370 | 35.15 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 377 | 35.16 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 416 | 35.19 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 452 | 35.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 455 | 35.22 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 477 | 35.23 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 483 | 35.24 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 508 | 35.24 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 526 | 35.25 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 618 | 35.29 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 673 | 35.32 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 723 | 35.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 821 | 35.38 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 824 | 35.38 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 23 | NA |