Os09g0313600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0313600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.47 | 0.494 | 8.5 | 2.38 | 0.532 | 0.277 | -0.614 | -3.54 | 0.86 | 5.44 | 0.3011 | 16964 | -- | -- |
| 126.82 | 0.524 | 8.42 | 1.92 | 0.529 | 0.747 | -0.604 | -- | 0.776 | 5.42 | 3.598 | 47520 | -- | -- |
| 110.84 | 0.49 | 8.5 | 2.38 | 0.525 | 0.294 | -- | -3.45 | 0.869 | 5.41 | 0.3351 | 17844 | -- | -- |
| 127.72 | 0.526 | 8.42 | 1.92 | 0.526 | 0.741 | -- | -- | 0.779 | 5.37 | 3.562 | 47520 | -- | -- |
| 125.11 | 0.521 | 8.5 | 2.39 | -- | 0.312 | -- | -3.5 | 0.879 | -- | 0.3 | 17611 | -- | -- |
| 132.19 | 0.539 | 8.38 | 2.43 | 0.535 | -- | -0.578 | -- | 0.933 | 5.38 | -- | -- | -- | -- |
| 133.01 | 0.54 | 8.38 | 2.43 | 0.531 | -- | -- | -- | 0.935 | 5.31 | -- | -- | -- | -- |
| 141.02 | 0.553 | 8.43 | 1.94 | -- | 0.767 | -- | -- | 0.78 | -- | 3.501 | 46540 | -- | -- |
| 155.56 | 0.581 | 8.52 | -- | 0.52 | 2.02 | -- | -- | 0.354 | 5.16 | 6.4 | 45565 | -- | -- |
| 147.73 | 0.568 | 8.39 | 2.45 | -- | -- | -- | -- | 0.948 | -- | -- | -- | -- | -- |
| 288.47 | 0.794 | 8.44 | -- | 0.573 | -- | -- | -- | 0.665 | 5.15 | -- | -- | -- | -- |
| 166.88 | 0.602 | 8.52 | -- | -- | 2.1 | -- | -- | 0.35 | -- | 6.897 | 45175 | -- | -- |
| 305.67 | 0.816 | 8.45 | -- | -- | -- | -- | -- | 0.677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 2 | 99.59 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 3 | 100.21 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 5 | 101.60 | wind | 3 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 9 | 102.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 22 | 104.47 | wind | 9 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 38 | 105.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 68 | 106.05 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 75 | 106.15 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 9 |
| 77 | 106.18 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 81 | 106.21 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 86 | 106.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 99 | 106.37 | humidity | 60 | 43200 | > th | dose dependent | sin | 5 | NA |
| 108 | 106.40 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 111 | 106.41 | humidity | 60 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 119 | 106.45 | humidity | 60 | 43200 | > th | dose dependent | rect. | 22 | 19 |
| 122 | 106.47 | humidity | 60 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 125 | 106.49 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 134 | 106.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 138 | 106.51 | humidity | 60 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 200 | 106.68 | humidity | 50 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 222 | 106.74 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 227 | 106.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 244 | 106.78 | humidity | 60 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 264 | 106.80 | humidity | 60 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 279 | 106.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 282 | 106.82 | humidity | 60 | 43200 | > th | dose dependent | no | NA | NA |
| 337 | 106.87 | humidity | 60 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 348 | 106.88 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 349 | 106.89 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 372 | 106.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 374 | 106.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 392 | 106.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 450 | 106.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 457 | 107.00 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 501 | 107.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 515 | 107.05 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 526 | 107.07 | humidity | 70 | 43200 | > th | dose independent | sin | 5 | NA |
| 566 | 107.10 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 570 | 107.10 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 580 | 107.12 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 584 | 107.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 586 | 107.12 | humidity | 70 | 43200 | > th | dose dependent | sin | 14 | NA |
| 633 | 107.16 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 635 | 107.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 639 | 107.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 649 | 107.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 686 | 107.20 | humidity | 80 | 43200 | < th | dose independent | sin | 16 | NA |
| 692 | 107.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 777 | 107.26 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 787 | 107.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 798 | 107.28 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 851 | 107.31 | humidity | 90 | 43200 | < th | dose dependent | sin | 3 | NA |
| 885 | 107.33 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 19 |
| 908 | 107.35 | humidity | 80 | 43200 | < th | dose independent | no | NA | NA |
| 936 | 107.36 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 955 | 107.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 980 | 107.39 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |