Os09g0313500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0313500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.9 | 0.438 | 9.44 | 1.91 | 0.361 | -1.12 | -0.733 | -0.361 | 0.591 | 5.02 | 21.65 | 752 | -- | -- |
| 86.95 | 0.434 | 9.45 | 1.89 | 0.355 | -1 | -0.701 | -- | 0.577 | 4.95 | 22.09 | 751 | -- | -- |
| 88.21 | 0.437 | 9.44 | 1.91 | 0.357 | -1.07 | -- | -0.27 | 0.588 | 5.03 | 21.99 | 781 | -- | -- |
| 88.26 | 0.438 | 9.45 | 1.88 | 0.349 | -1.01 | -- | -- | 0.577 | 5.22 | 22.27 | 823 | -- | -- |
| 93.85 | 0.451 | 9.45 | 1.91 | -- | -1.16 | -- | -0.396 | 0.582 | -- | 22.16 | 1004 | -- | -- |
| 98.08 | 0.464 | 9.42 | 2.13 | 0.363 | -- | -0.761 | -- | 0.714 | 4.19 | -- | -- | -- | -- |
| 99.7 | 0.468 | 9.42 | 2.14 | 0.358 | -- | -- | -- | 0.718 | 4.14 | -- | -- | -- | -- |
| 93.96 | 0.451 | 9.46 | 1.87 | -- | -1.06 | -- | -- | 0.576 | -- | 22.28 | 1014 | -- | -- |
| 116.88 | 0.504 | 9.56 | -- | 0.346 | -1.69 | -- | -- | 0.0828 | 4.34 | 21.8 | 47520 | -- | -- |
| 106.65 | 0.483 | 9.42 | 2.16 | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
| 220.52 | 0.695 | 9.47 | -- | 0.399 | -- | -- | -- | 0.48 | 4.05 | -- | -- | -- | -- |
| 123.34 | 0.517 | 9.57 | -- | -- | -1.7 | -- | -- | 0.0844 | -- | 21.89 | 47520 | -- | -- |
| 229.21 | 0.707 | 9.48 | -- | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 2 | 86.28 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 3 | 86.30 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 5 | 86.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 27 | 86.66 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 28 | 86.66 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 31 | 86.67 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 56 | 86.78 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 75 | 86.87 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 91 | 86.91 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 106 | 86.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 123 | 87.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 138 | 87.07 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 142 | 87.08 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 162 | 87.14 | temperature | 20 | 720 | < th | dose dependent | sin | 10 | NA |
| 165 | 87.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 204 | 87.31 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 232 | 87.40 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 264 | 87.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 268 | 87.47 | temperature | 20 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 293 | 87.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 317 | 87.54 | humidity | 90 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 353 | 87.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 386 | 87.63 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 387 | 87.63 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 0 | NA |
| 407 | 87.66 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 470 | 87.77 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 481 | 87.79 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 511 | 87.83 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 543 | 87.88 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 565 | 87.91 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 572 | 87.92 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 1 |
| 577 | 87.93 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 598 | 87.97 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 17 |
| 611 | 87.99 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 692 | 88.09 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 703 | 88.11 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 728 | 88.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 754 | 88.17 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 3 | NA |
| 760 | 88.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 773 | 88.19 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 778 | 88.19 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 819 | 88.26 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 823 | 88.27 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 3 | NA |
| 829 | 88.27 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 834 | 88.28 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 888 | 88.34 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 891 | 88.34 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 22 |
| 912 | 88.37 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 973 | 88.43 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |