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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0311600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR type resistance protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0254) R2 : 0.167
β1 : -0.866 (0.0929) R2dD : 0.165 R2D : 0.131
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.206 (0.0542) R2dN8 : 0.0355 R2N8 : 0.00188
σ : 0.476
deviance : 103.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.81 0.417 3.14 -0.268 0.139 0.517 -1.24 -1.14 0.039 3.19 1011 9505 -- --
81.96 0.422 3.18 -0.582 0.158 0.697 -1.33 -- -0.0286 3.49 1011 7656 -- --
83.75 0.426 3.14 -0.265 0.137 0.526 -- -1.08 0.0404 3.34 1011 9439 -- --
86.61 0.433 3.18 -0.54 0.146 0.685 -- -- -0.0269 3.48 1012 7924 -- --
84.76 0.429 3.14 -0.233 -- 0.526 -- -1.15 0.0481 -- 1011 9434 -- --
97.24 0.462 3.22 -0.9 0.137 -- -1.3 -- -0.217 3.08 -- -- -- --
102.76 0.475 3.22 -0.872 0.136 -- -- -- -0.21 3.72 -- -- -- --
87.76 0.436 3.18 -0.529 -- 0.68 -- -- -0.028 -- 1012 7872 -- --
91.97 0.447 3.16 -- 0.138 0.83 -- -- 0.0561 3.82 1013 7854 -- --
103.79 0.476 3.22 -0.866 -- -- -- -- -0.206 -- -- -- -- --
122.81 0.518 3.2 -- 0.119 -- -- -- -0.113 3.78 -- -- -- --
93.01 0.449 3.16 -- -- 0.83 -- -- 0.0606 -- 1013 7819 -- --
123.59 0.519 3.2 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.94 temperature 15 14400 < th dose dependent rect. 24 12
7 80.98 temperature 15 14400 < th dose independent rect. 11 1
18 81.03 temperature 15 14400 > th dose independent rect. 11 1
28 81.07 temperature 15 14400 < th dose independent rect. 9 3
34 81.09 temperature 15 14400 < th dose dependent sin 7 NA
45 81.11 temperature 15 14400 < th dose dependent rect. 24 2
120 81.29 wind 5 4320 < th dose independent rect. 14 1
128 81.30 humidity 50 43200 < th dose dependent rect. 18 1
145 81.35 wind 5 4320 > th dose independent rect. 14 1
165 81.41 temperature 15 14400 < th dose dependent rect. 5 1
255 81.70 temperature 15 14400 < th dose dependent rect. 9 21
273 81.75 temperature 15 14400 < th dose dependent rect. 10 1
288 81.77 temperature 15 14400 < th dose dependent no NA NA
300 81.81 humidity 50 14400 > th dose independent rect. 18 16
324 81.94 humidity 50 43200 < th dose independent rect. 18 2
345 82.08 humidity 50 14400 > th dose independent rect. 4 6
346 82.09 humidity 50 14400 > th dose independent rect. 23 11
347 82.10 humidity 50 14400 > th dose independent rect. 7 3
349 82.11 humidity 50 43200 > th dose independent rect. 18 2
350 82.11 humidity 50 14400 > th dose independent rect. 1 9
379 82.21 humidity 90 14400 < th dose dependent rect. 3 1
391 82.25 radiation 20 14400 < th dose independent rect. 17 14
394 82.28 humidity 50 14400 < th dose independent rect. 8 4
412 82.33 wind 7 14400 < th dose independent rect. 5 1
434 82.42 wind 7 14400 > th dose independent rect. 5 1
439 82.43 wind 5 14400 > th dose dependent rect. 14 1
440 82.43 atmosphere 1010 4320 > th dose dependent rect. 6 1
448 82.53 radiation 20 14400 < th dose independent rect. 4 3
452 82.54 radiation 20 14400 < th dose independent rect. 23 8
453 82.54 radiation 10 14400 > th dose dependent rect. 17 14
454 82.55 humidity 50 14400 > th dose independent rect. 10 1
456 82.55 radiation 20 14400 < th dose independent rect. 1 6
468 82.63 wind 7 14400 > th dose independent rect. 11 5
479 82.70 wind 7 14400 < th dose independent rect. 11 5
481 82.72 wind 7 14400 > th dose dependent rect. 11 4
485 82.73 humidity 50 14400 < th dose dependent rect. 16 19
490 82.77 humidity 50 14400 < th dose dependent rect. 10 1
494 82.80 radiation 20 14400 < th dose independent rect. 17 8
518 82.84 radiation 20 14400 < th dose independent rect. 17 1
523 82.85 atmosphere 1010 43200 < th dose dependent rect. 9 1
527 82.87 humidity 50 14400 > th dose independent sin 9 NA
532 82.88 humidity 50 14400 < th dose dependent rect. 13 22
533 82.90 humidity 50 14400 < th dose independent sin 8 NA
545 82.95 humidity 80 14400 > th dose independent rect. 20 4
551 83.01 atmosphere 1010 4320 > th dose independent rect. 6 1
559 83.05 wind 7 4320 < th dose dependent rect. 14 1
568 83.08 atmosphere 1010 4320 < th dose independent rect. 9 2
572 83.10 radiation 20 14400 < th dose independent rect. 17 5
584 83.14 humidity 60 14400 < th dose dependent rect. 20 14
588 83.15 humidity 60 14400 < th dose dependent rect. 6 4
598 83.16 atmosphere 1005 43200 > th dose independent rect. 6 1
632 83.25 atmosphere 1010 4320 > th dose independent rect. 9 1
636 83.26 humidity 50 14400 > th dose independent rect. 16 18
662 83.29 humidity 50 14400 < th dose independent rect. 16 1
664 83.29 humidity 50 14400 < th dose dependent rect. 16 1
672 83.31 atmosphere 1010 4320 < th dose independent rect. 3 8
677 83.32 wind 7 14400 > th dose dependent rect. 5 11
687 83.34 humidity 50 14400 < th dose independent rect. 16 19
690 83.35 atmosphere 1010 4320 > th dose independent rect. 3 8
717 83.38 humidity 50 14400 < th dose dependent rect. 13 4
720 83.39 atmosphere 1005 43200 < th dose independent rect. 7 1
722 83.39 atmosphere 1010 4320 < th dose independent rect. 5 2
725 83.39 humidity 50 14400 < th dose dependent sin 10 NA
730 83.41 humidity 50 14400 > th dose independent rect. 16 1
740 83.42 radiation 10 14400 > th dose dependent rect. 17 1
752 83.43 humidity 60 43200 > th dose dependent rect. 8 1
753 83.43 radiation 10 14400 > th dose dependent rect. 6 1
755 83.43 humidity 50 14400 < th dose dependent rect. 13 2
793 83.50 radiation 30 14400 < th dose dependent rect. 6 1
922 83.63 temperature 15 14400 < th dose independent rect. 22 1
940 83.64 atmosphere 1010 4320 < th dose independent rect. 2 12
998 83.69 atmosphere 1010 4320 > th dose independent rect. 2 12