Os09g0309700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional factor TINY.
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Os09g0309700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional factor TINY.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.95 | 0.358 | 10.9 | -0.0463 | 0.831 | -0.543 | -0.893 | 0.681 | -0.124 | 11 | 70.83 | 1351 | -- | -- |
| 58.94 | 0.358 | 10.9 | 0.0615 | 0.841 | -0.503 | -0.855 | -- | -0.0937 | 11 | 70.23 | 1341 | -- | -- |
| 61.27 | 0.365 | 10.9 | -0.0746 | 0.833 | -0.551 | -- | 0.605 | -0.127 | 10.9 | 70.93 | 1363 | -- | -- |
| 62.01 | 0.367 | 10.9 | 0.0134 | 0.845 | -0.514 | -- | -- | -0.0937 | 10.9 | 71 | 1348 | -- | -- |
| 98.99 | 0.463 | 10.9 | -0.0993 | -- | -0.66 | -- | 0.952 | -0.121 | -- | 74 | 1555 | -- | -- |
| 68.66 | 0.388 | 10.9 | 0.179 | 0.801 | -- | -0.949 | -- | -0.0175 | 10.9 | -- | -- | -- | -- |
| 72.39 | 0.398 | 10.9 | 0.139 | 0.808 | -- | -- | -- | -0.0214 | 10.7 | -- | -- | -- | -- |
| 100.27 | 0.466 | 10.9 | 0.0248 | -- | -0.62 | -- | -- | -0.101 | -- | 73 | 1547 | -- | -- |
| 62.02 | 0.367 | 10.9 | -- | 0.846 | -0.522 | -- | -- | -0.0996 | 10.9 | 70.82 | 1348 | -- | -- |
| 112.68 | 0.496 | 10.9 | 0.123 | -- | -- | -- | -- | -0.026 | -- | -- | -- | -- | -- |
| 72.9 | 0.399 | 10.9 | -- | 0.807 | -- | -- | -- | -0.0369 | 10.7 | -- | -- | -- | -- |
| 100.28 | 0.466 | 10.9 | -- | -- | -0.622 | -- | -- | -0.101 | -- | 73 | 1547 | -- | -- |
| 113.08 | 0.496 | 10.9 | -- | -- | -- | -- | -- | -0.0396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.30 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 3 | 53.41 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 4 | 53.58 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 8 | 53.93 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 9 | 53.95 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 10 | 53.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 14 | 54.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 15 | 54.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 16 | 54.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 26 | 54.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 38 | 54.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 51 | 54.70 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 55 | 54.80 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 73 | 54.93 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 76 | 54.94 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 78 | 54.98 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 94 | 55.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 96 | 55.20 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 98 | 55.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 134 | 55.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 142 | 55.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 152 | 55.71 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 154 | 55.71 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 156 | 55.71 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 207 | 55.71 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 211 | 55.71 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 266 | 55.75 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 280 | 55.87 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 296 | 55.98 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 301 | 56.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 303 | 56.03 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 306 | 56.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 308 | 56.06 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 324 | 56.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 326 | 56.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 351 | 56.34 | humidity | 60 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 376 | 56.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 378 | 56.55 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 404 | 56.67 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 422 | 56.70 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 428 | 56.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 439 | 56.73 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 493 | 56.87 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 3 |
| 495 | 56.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 500 | 56.90 | radiation | 10 | 720 | < th | dose dependent | sin | 16 | NA |
| 538 | 57.04 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 564 | 57.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 577 | 57.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 592 | 57.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 599 | 57.19 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 17 |
| 613 | 57.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 627 | 57.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 657 | 57.27 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 2 |
| 686 | 57.31 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 728 | 57.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 736 | 57.37 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 775 | 57.43 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 782 | 57.45 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 787 | 57.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 800 | 57.47 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 823 | 57.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 832 | 57.50 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 18 |
| 875 | 57.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 888 | 57.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 905 | 57.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 920 | 57.60 | humidity | 80 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 936 | 57.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 11 |
| 938 | 57.62 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 954 | 57.62 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 958 | 57.63 | atmosphere | 995 | 43200 | > th | dose independent | sin | 2 | NA |
| 969 | 57.65 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 992 | 57.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |