Os09g0309500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0309500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.73 | 0.392 | 12.7 | -0.495 | 0.436 | -1.21 | -0.618 | -1.11 | -0.335 | 6.81 | 8.968 | 114 | -- | -- |
| 70.63 | 0.391 | 12.7 | -0.334 | 0.439 | -1.25 | -0.516 | -- | -0.288 | 7.01 | 10.71 | 113 | -- | -- |
| 70.65 | 0.391 | 12.7 | -0.476 | 0.436 | -1.22 | -- | -0.923 | -0.326 | 6.99 | 5.466 | 111 | -- | -- |
| 71.32 | 0.393 | 12.7 | -0.347 | 0.44 | -1.23 | -- | -- | -0.289 | 6.99 | 11.31 | 113 | -- | -- |
| 78.51 | 0.413 | 12.7 | -0.419 | -- | -1.47 | -- | -0.951 | -0.284 | -- | 0.08634 | 206 | -- | -- |
| 86.15 | 0.435 | 12.7 | -0.6 | 0.705 | -- | -0.206 | -- | -0.461 | 5.41 | -- | -- | -- | -- |
| 86.25 | 0.435 | 12.7 | -0.601 | 0.703 | -- | -- | -- | -0.46 | 5.39 | -- | -- | -- | -- |
| 78.92 | 0.414 | 12.7 | -0.279 | -- | -1.43 | -- | -- | -0.197 | -- | 16.87 | 200 | -- | -- |
| 74.18 | 0.401 | 12.7 | -- | 0.411 | -1.41 | -- | -- | -0.229 | 7.39 | 8.823 | 112 | -- | -- |
| 112.01 | 0.495 | 12.7 | -0.577 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 95.77 | 0.458 | 12.7 | -- | 0.693 | -- | -- | -- | -0.393 | 5.42 | -- | -- | -- | -- |
| 80.56 | 0.418 | 12.7 | -- | -- | -1.34 | -- | -- | -0.202 | -- | 18.1 | 216 | -- | -- |
| 120.8 | 0.513 | 12.7 | -- | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 4 | 62.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 12 | 63.69 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 13 | 63.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 20 |
| 18 | 63.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 27 | 64.38 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 33 | 64.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 36 | 64.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 37 | 64.71 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 73 | 65.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 159 | 66.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 162 | 66.71 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 181 | 66.96 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 202 | 67.20 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 245 | 67.63 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 299 | 68.01 | temperature | 30.0 | 10 | < th | dose dependent | sin | 20 | NA |
| 314 | 68.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 339 | 68.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 377 | 68.48 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 8 | 11 |
| 438 | 68.79 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 487 | 69.04 | humidity | 60.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 493 | 69.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 18 |
| 499 | 69.09 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 500 | 69.09 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 505 | 69.12 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 521 | 69.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 559 | 69.35 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 20 |
| 561 | 69.36 | temperature | 10.0 | 10 | > th | dose dependent | sin | 19 | NA |
| 583 | 69.44 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 603 | 69.50 | temperature | 25.0 | 30 | > th | dose dependent | sin | 22 | NA |
| 623 | 69.55 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 11 | 8 |
| 625 | 69.56 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 630 | 69.58 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 640 | 69.62 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 672 | 69.71 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 716 | 69.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 720 | 69.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 728 | 69.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 731 | 69.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 734 | 69.86 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 744 | 69.89 | radiation | 10.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 761 | 69.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 762 | 69.95 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 802 | 70.07 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 811 | 70.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 844 | 70.14 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 980 | 70.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 20 |
| 982 | 70.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 996 | 70.43 | temperature | 30.0 | 30 | < th | dose independent | rect. | 17 | 7 |