Os09g0308600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0308600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 298.09 | 0.811 | 7.41 | -5.69 | 1.64 | 1.44 | 0.428 | 1.83 | -0.722 | 10.5 | 20.66 | 499 | -- | -- |
| 308.13 | 0.818 | 7.45 | -6.07 | 1.67 | 1.26 | 0.0459 | -- | -0.805 | 10.6 | 20.86 | 584 | -- | -- |
| 298.55 | 0.805 | 7.41 | -5.68 | 1.65 | 1.41 | -- | 1.75 | -0.725 | 10.4 | 20.7 | 505 | -- | -- |
| 308.08 | 0.817 | 7.46 | -6.07 | 1.67 | 1.28 | -- | -- | -0.821 | 10.6 | 20.82 | 584 | -- | -- |
| 431.06 | 0.967 | 7.45 | -5.75 | -- | 1.44 | -- | 1.56 | -0.709 | -- | 20.4 | 192 | -- | -- |
| 360.89 | 0.891 | 7.39 | -5.61 | 1.51 | -- | 0.139 | -- | -0.51 | 10.9 | -- | -- | -- | -- |
| 360.97 | 0.89 | 7.39 | -5.6 | 1.51 | -- | -- | -- | -0.51 | 10.9 | -- | -- | -- | -- |
| 434.73 | 0.975 | 7.49 | -5.89 | -- | 1.14 | -- | -- | -0.757 | -- | 20.8 | 1586 | -- | -- |
| 592.53 | 1.13 | 6.96 | -- | 1.32 | -3.66 | -- | -- | 1.37 | 11.3 | 21.06 | 47520 | -- | -- |
| 502.22 | 1.05 | 7.43 | -5.63 | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
| 1187.72 | 1.61 | 7.25 | -- | 1.56 | -- | -- | -- | 0.114 | 11.1 | -- | -- | -- | -- |
| 719.1 | 1.25 | 7.02 | -- | -- | -3.7 | -- | -- | 1.32 | -- | 21.05 | 47520 | -- | -- |
| 1339.09 | 1.71 | 7.29 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 2 | 288.04 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 5 | 289.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 22 |
| 19 | 291.77 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 20 | 291.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 27 | 292.25 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 52 | 293.21 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 59 | 293.43 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 71 | 293.78 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 22 |
| 82 | 294.03 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 83 | 294.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 116 | 294.74 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 197 | 296.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 199 | 296.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 227 | 296.54 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 233 | 296.64 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 258 | 297.03 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 288 | 297.46 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 21 |
| 290 | 297.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 341 | 298.08 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 346 | 298.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 355 | 298.21 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 386 | 298.60 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 390 | 298.66 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 424 | 298.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 449 | 299.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 484 | 299.64 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 580 | 300.72 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 627 | 301.25 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 732 | 302.25 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 798 | 302.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 808 | 302.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 819 | 302.92 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 820 | 302.94 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 902 | 303.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 941 | 303.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 973 | 304.06 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 7 |