Os09g0306800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os09g0306800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.68 | 0.208 | 10.8 | -0.75 | 0.27 | -0.233 | -0.0509 | -0.0633 | -0.0252 | 3.46 | 20.5 | 22 | -- | -- |
| 19.7 | 0.207 | 10.8 | -0.761 | 0.269 | -0.229 | -0.0851 | -- | -0.028 | 3.49 | 20.53 | 21 | -- | -- |
| 19.69 | 0.207 | 10.8 | -0.746 | 0.27 | -0.235 | -- | -0.0786 | -0.0245 | 3.42 | 20.51 | 21 | -- | -- |
| 19.72 | 0.207 | 10.8 | -0.761 | 0.268 | -0.231 | -- | -- | -0.0272 | 3.43 | 20.57 | 21 | -- | -- |
| 23.56 | 0.226 | 10.8 | -0.729 | -- | -0.165 | -- | -0.0241 | -0.00627 | -- | 20.42 | 5 | -- | -- |
| 21.93 | 0.22 | 10.7 | -0.703 | 0.228 | -- | -0.157 | -- | 0.0164 | 4.09 | -- | -- | -- | -- |
| 22 | 0.22 | 10.7 | -0.701 | 0.226 | -- | -- | -- | 0.0173 | 3.96 | -- | -- | -- | -- |
| 23.57 | 0.226 | 10.8 | -0.731 | -- | -0.165 | -- | -- | -0.00773 | -- | 20.45 | 4 | -- | -- |
| 34.3 | 0.274 | 10.7 | -- | 0.238 | -0.115 | -- | -- | 0.0735 | 3.64 | 21 | 20 | -- | -- |
| 24.8 | 0.233 | 10.7 | -0.692 | -- | -- | -- | -- | 0.0233 | -- | -- | -- | -- | -- |
| 34.94 | 0.277 | 10.7 | -- | 0.213 | -- | -- | -- | 0.0953 | 4.01 | -- | -- | -- | -- |
| 35.78 | 0.279 | 10.7 | -- | -- | 0.132 | -- | -- | 0.157 | -- | 25.7 | 38 | -- | -- |
| 37.42 | 0.286 | 10.7 | -- | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 3 | 19.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 5 | 19.34 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 6 | 19.38 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 8 | 19.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 9 | 19.41 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 10 | 19.41 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 14 | 19.41 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 16 | 19.42 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 63 | 19.45 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 21 |
| 77 | 19.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 78 | 19.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 79 | 19.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 81 | 19.49 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 83 | 19.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 84 | 19.50 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 85 | 19.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 86 | 19.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 88 | 19.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 120 | 19.51 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 135 | 19.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 173 | 19.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 178 | 19.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 179 | 19.56 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 185 | 19.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 189 | 19.58 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 190 | 19.58 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 191 | 19.59 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 202 | 19.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 207 | 19.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 225 | 19.63 | temperature | 20.0 | 30 | > th | dose independent | rect. | 17 | 16 |
| 231 | 19.63 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 256 | 19.67 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 262 | 19.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 275 | 19.70 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 299 | 19.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 301 | 19.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 307 | 19.74 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 22 |
| 317 | 19.75 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 23 |
| 318 | 19.75 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 23 |
| 328 | 19.76 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 23 |
| 344 | 19.77 | temperature | 20.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 353 | 19.78 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 357 | 19.78 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 363 | 19.78 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 367 | 19.78 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 384 | 19.79 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 385 | 19.79 | wind | 9.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 389 | 19.79 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 396 | 19.80 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 401 | 19.80 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 406 | 19.80 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 409 | 19.80 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 13 | 10 |
| 412 | 19.81 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 419 | 19.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 431 | 19.82 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 15 |
| 465 | 19.83 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 466 | 19.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 492 | 19.85 | temperature | 20.0 | 10 | < th | dose independent | sin | 14 | NA |
| 528 | 19.86 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 533 | 19.87 | temperature | 20.0 | 10 | > th | dose independent | no | NA | NA |
| 551 | 19.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 578 | 19.89 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 579 | 19.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 587 | 19.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 590 | 19.90 | wind | 9.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 591 | 19.90 | wind | 9.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 593 | 19.90 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 609 | 19.91 | temperature | 20.0 | 30 | > th | dose independent | sin | 15 | NA |
| 620 | 19.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 23 |
| 627 | 19.91 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 6 |
| 652 | 19.92 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 21 |
| 662 | 19.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 683 | 19.93 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 700 | 19.93 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 701 | 19.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 706 | 19.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 729 | 19.95 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 732 | 19.95 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 758 | 19.96 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 17 | 15 |
| 772 | 19.97 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 785 | 19.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 786 | 19.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 822 | 19.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 845 | 19.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 23 |
| 848 | 19.99 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 857 | 19.99 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 860 | 20.00 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 872 | 20.00 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 18 |
| 875 | 20.00 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 880 | 20.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 882 | 20.00 | atmosphere | 1010.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 883 | 20.00 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 899 | 20.00 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 903 | 20.01 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 952 | 20.01 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 962 | 20.01 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 997 | 20.02 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 10 |