Os09g0305300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os09g0305300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.05 | 0.665 | 9.09 | 1.63 | 5.51 | 3.77 | -1.28 | -0.119 | 0.0808 | 17.5 | 24.63 | 653 | 2.22 | -- |
| 200.02 | 0.659 | 9.09 | 1.62 | 5.5 | 3.78 | -1.31 | -- | 0.0744 | 17.5 | 24.53 | 648 | 2.2 | -- |
| 203.75 | 0.665 | 9.09 | 1.58 | 5.49 | 3.81 | -- | 0.277 | 0.0646 | 17.5 | 24.6 | 650 | 2.01 | -- |
| 203.85 | 0.665 | 9.1 | 1.61 | 5.48 | 3.78 | -- | -- | 0.0646 | 17.5 | 24.59 | 653 | 1.97 | -- |
| 621.09 | 1.17 | 9.21 | 0.46 | -- | -5.69 | -- | 0.672 | -0.894 | -- | 51.86 | 1192 | 0.000349 | -- |
| 382.34 | 0.917 | 9.22 | 0.806 | 5.28 | -- | -1.24 | -- | -0.588 | 16.9 | -- | -- | -- | -- |
| 386.28 | 0.92 | 9.22 | 0.801 | 5.27 | -- | -- | -- | -0.594 | 16.9 | -- | -- | -- | -- |
| 389.9 | 0.92 | 8.88 | 3.65 | -- | 8.6 | -- | -- | 0.372 | -- | 124.4 | 1308 | 0.0955 | -- |
| 270.56 | 0.766 | 9.11 | -- | 5.41 | 3.68 | -- | -- | -0.0376 | 17.5 | 24.7 | 645 | 1.49 | -- |
| 1850.27 | 2.01 | 9.17 | 0.607 | -- | -- | -- | -- | -0.73 | -- | -- | -- | -- | -- |
| 403.21 | 0.939 | 9.24 | -- | 5.25 | -- | -- | -- | -0.684 | 16.9 | -- | -- | -- | -- |
| 345 | 0.865 | 9.08 | -- | -- | 6.85 | -- | -- | -0.317 | -- | 173.4 | 1299 | 5.65e-05 | -- |
| 1859.98 | 2.01 | 9.18 | -- | -- | -- | -- | -- | -0.798 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 3 | 190.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 7 | 192.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 35 | 201.29 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 41 | 202.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 52 | 202.93 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 58 | 203.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 64 | 204.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 102 | 208.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 103 | 208.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 115 | 209.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 157 | 213.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 501 | 233.41 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 505 | 233.70 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 516 | 234.30 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 526 | 234.81 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 533 | 235.13 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 577 | 237.61 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 599 | 238.33 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 626 | 239.54 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 684 | 240.95 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 693 | 241.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 720 | 242.16 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 787 | 244.36 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 18 |
| 798 | 244.60 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 858 | 246.20 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 21 |
| 877 | 246.72 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |