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Os09g0304800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.5 (0.0956) R2 : 0.846
β1 : 9.5 (0.41) R2dD : 0.441 R2D : 0.57
β2 : 0.862 (0.19) R2dC : 0.00709 R2C : -0.00209
β3 : -3.05 (0.402) R2dE : 0.0496 R2E : 0.276
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.39 (1.07) R2dD*E : 0.0474 R2D*E : 0.0709
γ1 : 2.76 (0.174) R2dN8 : 0.15 R2N8 : 0.0697
σ : 1.38
deviance : 873.1
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C
peak time of C : 16.5
E
wheather : radiation
threshold : 20
memory length : 31538
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 0.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
866.84 1.38 9.51 9.32 0.86 -3.14 2.04 9.26 2.78 16.5 19.66 31492 16 0.55
952.06 1.44 9.16 9.31 0.83 -3.59 1.65 -- 2.88 16.1 20.92 19116 16.1 1.64
873.1 1.38 9.5 9.5 0.862 -3.05 -- 9.39 2.76 16.5 20 31538 16 0.5
918.19 1.41 9.15 9.11 0.679 -3.63 -- -- 3.03 16.5 26.33 32040 16 2.07
913.01 1.41 9.51 9.4 -- -3.14 -- 9.5 2.76 -- 19.98 31537 16 0.483
1179.9 1.61 8.87 12.3 0.856 -- 1.9 -- 3.81 16.6 -- -- -- --
1189.23 1.61 8.86 12.3 0.866 -- -- -- 3.82 16.4 -- -- -- --
943.47 1.43 9.13 8.34 -- -4.34 -- -- 3.04 -- 26.47 31522 16 3.24
1706.39 1.92 9.14 -- 0.289 -8.18 -- -- 0.984 16.5 27.2 47520 16.1 0.258
1229.52 1.64 8.86 12.2 -- -- -- -- 3.8 -- -- -- -- --
5155.47 3.36 9.17 -- 0.638 -- -- -- 2.46 16.8 -- -- -- --
1371.72 1.72 9.69 -- -- -8.95 -- -- 0.11 -- 29.91 47520 16.1 0.0167
5177 3.36 9.16 -- -- -- -- -- 2.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 845.85 radiation 20 43200 > th dose independent rect. 15 3
29 859.11 radiation 10 43200 < th dose dependent rect. 16 3
31 859.19 radiation 10 43200 < th dose dependent rect. 16 6
32 859.21 radiation 10 43200 < th dose dependent rect. 16 9
33 859.21 radiation 10 43200 < th dose dependent rect. 16 11
83 865.48 radiation 40 43200 < th dose dependent rect. 15 4
85 865.53 radiation 40 43200 < th dose dependent rect. 15 12
87 865.54 radiation 40 43200 < th dose dependent rect. 15 7
88 865.54 radiation 40 43200 < th dose dependent rect. 15 10
138 867.72 radiation 20 43200 > th dose dependent rect. 15 3
152 867.88 radiation 40 43200 < th dose dependent rect. 15 1
154 868.63 radiation 20 43200 < th dose dependent rect. 15 1
155 868.78 radiation 1 43200 > th dose dependent rect. 15 1
228 873.95 wind 1 43200 < th dose independent rect. 22 1
252 874.58 radiation 40 43200 > th dose dependent rect. 14 18
253 875.03 radiation 40 43200 > th dose dependent rect. 14 2
308 880.99 wind 1 43200 < th dose dependent rect. 22 1
393 890.23 humidity 70 43200 < th dose dependent rect. 6 4
413 890.81 radiation 10 43200 < th dose dependent sin 14 NA
453 893.41 wind 1 43200 > th dose independent rect. 22 1
475 895.18 radiation 20 43200 > th dose independent sin 14 NA
552 901.75 wind 1 43200 < th dose dependent rect. 22 5
554 902.30 humidity 60 43200 > th dose independent rect. 6 5
561 902.83 humidity 60 43200 > th dose independent rect. 2 9
572 904.10 humidity 60 43200 < th dose independent rect. 17 18
573 904.10 humidity 60 43200 < th dose dependent rect. 17 22
575 904.35 humidity 60 43200 < th dose dependent sin 3 NA
593 904.77 humidity 60 43200 > th dose independent rect. 18 16
594 904.87 wind 1 43200 < th dose dependent rect. 18 9
596 905.16 humidity 50 43200 > th dose independent rect. 14 3
604 906.43 humidity 60 43200 < th dose dependent rect. 9 7
610 907.12 humidity 60 43200 < th dose dependent rect. 6 10
640 908.36 humidity 60 43200 < th dose independent rect. 9 2
642 908.75 humidity 60 43200 < th dose dependent rect. 14 23
650 909.29 humidity 50 43200 > th dose independent rect. 14 22
665 910.56 humidity 60 43200 < th dose independent rect. 6 5
692 911.35 humidity 60 43200 < th dose independent rect. 23 12
710 911.77 wind 9 43200 > th dose dependent rect. 11 1
774 913.10 humidity 60 43200 < th dose dependent rect. 8 23
776 913.11 humidity 60 43200 < th dose dependent rect. 6 22
779 913.12 humidity 60 43200 < th dose dependent rect. 6 20
783 913.13 humidity 60 43200 < th dose dependent no NA NA
803 913.14 humidity 60 43200 < th dose dependent rect. 8 20
859 914.27 radiation 30 43200 < th dose independent rect. 15 3
862 914.31 radiation 30 43200 < th dose independent rect. 15 12
863 914.32 radiation 30 43200 < th dose independent rect. 15 10
871 914.36 radiation 30 43200 < th dose independent rect. 15 7
878 914.47 humidity 80 43200 < th dose independent rect. 19 1
911 916.11 wind 1 43200 < th dose independent rect. 22 5
916 916.40 humidity 60 43200 < th dose independent sin 9 NA
988 919.00 wind 1 14400 < th dose dependent rect. 1 2