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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0304400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0219) R2 : 0.0845
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.299 (0.046) R2dN8 : 0.109 R2N8 : 0.0845
σ : 0.412
deviance : 77.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.49 0.406 2.97 0.253 0.184 0.0601 -1.64 -1.46 0.343 11.6 0.05997 123 -- --
75.96 0.409 2.99 0.145 0.0104 -0.101 -0.379 -- 0.314 6.53 18.7 42 -- --
75.52 0.405 2.98 0.18 0.126 0.0536 -- -0.639 0.316 12 0.06 844 -- --
75.88 0.406 2.97 0.21 0.101 0.164 -- -- 0.338 11.3 1.289 2830 -- --
75.68 0.405 2.98 0.226 -- 0.233 -- -0.463 0.346 -- 0.1716 1224 -- --
76.28 0.409 2.98 0.146 0.122 -- -0.0691 -- 0.316 11.4 -- -- -- --
76.3 0.409 2.98 0.144 0.122 -- -- -- 0.316 11.7 -- -- -- --
75.83 0.406 2.98 0.216 -- 0.327 -- -- 0.344 -- 0.13 1299 -- --
76.64 0.408 2.98 -- 0.101 0.12 -- -- 0.329 11.8 1.828 2786 -- --
77.24 0.411 2.99 0.14 -- -- -- -- 0.314 -- -- -- -- --
76.84 0.41 2.99 -- 0.121 -- -- -- 0.3 11.7 -- -- -- --
76.86 0.408 2.99 -- -- 0.232 -- -- 0.313 -- 0.5199 1236 -- --
77.75 0.412 2.99 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.98 wind 1.0 90 < th dose independent rect. 14 1
2 72.27 wind 3.0 30 < th dose independent rect. 14 4
4 72.43 wind 3.0 30 < th dose dependent rect. 14 4
14 72.81 wind 1.0 90 < th dose dependent rect. 14 1
16 72.95 atmosphere 1000.0 10 < th dose independent rect. 14 7
19 72.96 atmosphere 1000.0 10 < th dose dependent rect. 14 7
62 73.15 humidity 80.0 30 < th dose independent rect. 8 1
64 73.17 atmosphere 1005.0 30 > th dose dependent rect. 8 1
65 73.18 temperature 10.0 1440 > th dose independent rect. 9 1
68 73.18 atmosphere 995.0 1440 > th dose independent rect. 9 1
71 73.18 atmosphere 1015.0 1440 < th dose independent rect. 9 1
72 73.18 temperature 10.0 1440 > th dose independent rect. 10 23
75 73.18 wind 3.0 10 < th dose dependent rect. 16 1
79 73.19 wind 3.0 10 < th dose independent rect. 16 1
82 73.20 humidity 90.0 30 < th dose dependent rect. 8 1
91 73.22 wind 1.0 30 > th dose dependent rect. 8 1
93 73.22 atmosphere 1000.0 10 < th dose dependent rect. 15 3
100 73.23 wind 3.0 30 > th dose independent rect. 8 1
101 73.23 atmosphere 1005.0 30 > th dose independent rect. 8 1
102 73.23 radiation 30.0 30 < th dose independent rect. 8 1
110 73.24 temperature 25.0 30 > th dose independent rect. 8 1
111 73.25 atmosphere 1000.0 90 < th dose independent rect. 14 1
112 73.25 atmosphere 1000.0 10 < th dose independent rect. 15 1
117 73.25 radiation 10.0 30 > th dose independent rect. 8 1
127 73.25 atmosphere 1000.0 90 < th dose dependent rect. 14 1
128 73.25 atmosphere 1000.0 10 < th dose dependent rect. 15 1
141 73.26 temperature 10.0 30 > th dose dependent rect. 8 1
146 73.27 wind 7.0 30 < th dose independent rect. 8 1
148 73.27 temperature 10.0 30 > th dose independent rect. 8 1
150 73.27 temperature 30.0 30 < th dose independent rect. 8 1
151 73.27 humidity 50.0 30 > th dose independent rect. 8 1
154 73.27 atmosphere 995.0 30 > th dose independent rect. 8 1
156 73.27 atmosphere 1010.0 30 < th dose independent rect. 8 1
159 73.27 precipitation 0.1 30 < th dose independent rect. 8 1
160 73.27 temperature 10.0 30 > th dose independent rect. 9 23
163 73.27 precipitation 0.1 30 < th dose dependent rect. 8 1
173 73.31 wind 9.0 30 < th dose dependent rect. 8 1
174 73.31 radiation 1.0 30 > th dose dependent rect. 8 1
181 73.32 radiation 40.0 30 < th dose dependent rect. 8 1
202 73.40 humidity 50.0 30 > th dose dependent rect. 8 1
235 73.61 atmosphere 1015.0 30 < th dose dependent rect. 8 1
239 73.64 temperature 30.0 30 < th dose dependent rect. 8 1
263 73.73 radiation 10.0 30 > th dose independent rect. 13 22
418 74.17 radiation 20.0 10 < th dose independent rect. 8 10
445 74.21 temperature 25.0 30 > th dose dependent rect. 15 16
447 74.22 radiation 20.0 10 < th dose independent rect. 6 12
496 74.29 wind 5.0 270 < th dose independent rect. 3 13
497 74.29 atmosphere 1000.0 90 < th dose dependent sin 18 NA
503 74.29 temperature 10.0 90 > th dose dependent rect. 5 14
541 74.34 wind 9.0 30 < th dose independent rect. 9 23
586 74.40 temperature 25.0 30 > th dose dependent sin 12 NA
597 74.42 atmosphere 1000.0 270 < th dose independent rect. 12 1
604 74.42 atmosphere 1000.0 270 < th dose dependent rect. 12 1
637 74.46 atmosphere 1010.0 270 < th dose dependent rect. 12 4
656 74.48 wind 5.0 30 < th dose independent rect. 13 22
681 74.51 radiation 10.0 30 > th dose independent sin 12 NA
692 74.51 temperature 25.0 270 > th dose dependent rect. 15 1
699 74.51 temperature 25.0 90 > th dose dependent rect. 15 11
711 74.52 temperature 25.0 90 > th dose dependent rect. 15 6
720 74.53 radiation 20.0 10 < th dose independent rect. 12 6
723 74.53 temperature 15.0 90 > th dose independent rect. 5 14
731 74.53 atmosphere 1015.0 90 < th dose dependent rect. 13 10
755 74.55 atmosphere 1000.0 90 > th dose independent rect. 11 14
773 74.56 radiation 20.0 10 < th dose independent rect. 8 8
785 74.56 wind 9.0 30 < th dose dependent rect. 13 22
795 74.58 humidity 80.0 10 < th dose independent rect. 15 1
796 74.58 radiation 10.0 30 > th dose independent rect. 15 1
809 74.58 radiation 1.0 270 < th dose dependent rect. 8 20
815 74.59 temperature 15.0 90 > th dose independent rect. 23 14
829 74.60 radiation 20.0 10 > th dose independent rect. 11 2
832 74.60 temperature 25.0 30 > th dose independent rect. 15 6
833 74.60 atmosphere 995.0 270 > th dose independent rect. 15 22
840 74.60 radiation 1.0 30 > th dose dependent rect. 14 21
852 74.61 wind 5.0 10 < th dose independent rect. 6 12
864 74.62 temperature 25.0 270 > th dose independent rect. 13 2
869 74.62 radiation 10.0 30 > th dose independent rect. 15 16
885 74.63 radiation 1.0 270 < th dose independent rect. 8 20
895 74.64 radiation 20.0 10 < th dose independent sin 22 NA
915 74.65 temperature 25.0 270 > th dose independent rect. 12 4
932 74.66 radiation 10.0 30 < th dose independent sin 12 NA
934 74.66 humidity 70.0 720 > th dose independent rect. 5 4
955 74.67 temperature 30.0 10 < th dose independent rect. 15 1
959 74.67 precipitation 0.1 90 > th dose independent rect. 10 7
962 74.67 wind 1.0 10 > th dose independent rect. 5 14
974 74.68 temperature 30.0 10 < th dose independent rect. 14 4
990 74.68 atmosphere 1015.0 90 < th dose dependent rect. 13 8
997 74.69 atmosphere 1015.0 1440 < th dose independent rect. 15 2