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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0301700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0333) R2 : 0.119
β1 : -0.0284 (0.122) R2dD : 0.000106 R2D : -0.00402
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.2 (0.504) R2dE : 0.0112 R2E : 0.0116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.9 (2.36) R2dD*E : 0.0883 R2D*E : 0.0921
γ1 : 0.179 (0.0712) R2dN8 : 0.0163 R2N8 : 0.0126
σ : 0.622
deviance : 178.5
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.2
memory length : 113
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.92
open length of G : 2.37

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.55 0.626 2.91 -0.00934 0.0497 1.14 -0.489 16.4 0.181 9.6 1.212 114 7.88 2.42
194.55 0.65 2.92 -0.00858 0.0577 1.7 -0.0345 -- 0.203 9.91 1.384 122 8.01 1.17
178.34 0.622 2.92 -0.0233 0.0512 1.13 -- 16.1 0.176 9.71 1.2 113 7.92 2.38
194.5 0.65 2.92 -0.0183 0.0688 1.61 -- -- 0.193 11.2 1.386 124 8 1.16
178.5 0.622 2.92 -0.0284 -- 1.2 -- 15.9 0.179 -- 1.2 113 7.92 2.37
199.2 0.662 2.92 -0.00842 0.11 -- 0.0189 -- 0.177 10.6 -- -- -- --
199.2 0.661 2.92 -0.00766 0.11 -- -- -- 0.177 10.6 -- -- -- --
194.73 0.65 2.91 -0.00891 -- 1.55 -- -- 0.202 -- 1.5 129 8 1.17
181.33 0.627 2.92 -- 0.0651 3.42 -- -- 0.236 11.6 0.4169 55 7.84 1.46
199.95 0.661 2.92 -0.00973 -- -- -- -- 0.177 -- -- -- -- --
199.2 0.66 2.92 -- 0.11 -- -- -- 0.178 10.6 -- -- -- --
172.65 0.612 2.92 -- -- 4.44 -- -- 0.226 -- 0.6226 55 8.18 0.95
199.95 0.66 2.92 -- -- -- -- -- 0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.72 wind 7.0 30 > th dose independent rect. 17 1
3 182.49 wind 1.0 90 < th dose dependent rect. 8 2
5 182.79 wind 3.0 30 < th dose dependent rect. 2 1
6 182.81 wind 1.0 90 < th dose independent rect. 8 2
7 182.83 temperature 20.0 30 > th dose dependent rect. 2 1
12 182.93 temperature 20.0 30 > th dose independent rect. 2 1
13 182.95 atmosphere 1005.0 30 > th dose independent rect. 2 1
15 182.97 wind 3.0 30 < th dose independent rect. 2 1
16 183.00 atmosphere 1000.0 30 > th dose dependent rect. 2 1
21 183.06 humidity 80.0 30 > th dose independent rect. 2 1
25 183.09 temperature 10.0 30 > th dose independent rect. 2 1
27 183.09 temperature 30.0 30 < th dose independent rect. 2 1
28 183.09 humidity 50.0 30 > th dose independent rect. 2 1
32 183.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 183.09 radiation 1.0 30 < th dose independent rect. 2 1
39 183.09 precipitation 0.1 30 < th dose independent rect. 2 1
40 183.09 temperature 10.0 30 > th dose independent rect. 3 23
41 183.09 humidity 50.0 30 > th dose dependent rect. 2 1
42 183.09 radiation 1.0 30 < th dose dependent rect. 2 1
47 183.09 precipitation 0.1 30 < th dose dependent rect. 2 1
55 183.24 atmosphere 1000.0 90 < th dose independent rect. 2 1
56 183.24 atmosphere 1000.0 10 < th dose independent rect. 3 1
66 183.24 atmosphere 1000.0 90 < th dose dependent rect. 2 1
67 183.24 atmosphere 1000.0 10 < th dose dependent rect. 3 1
82 183.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
85 183.98 temperature 30.0 30 < th dose dependent rect. 2 1
98 184.88 wind 1.0 30 > th dose independent rect. 2 1
103 185.24 atmosphere 1010.0 90 > th dose independent rect. 8 1
104 185.24 atmosphere 1010.0 10 > th dose independent rect. 9 1
170 185.42 wind 9.0 30 < th dose independent rect. 3 23
195 185.57 wind 7.0 30 > th dose dependent rect. 17 1
201 185.86 atmosphere 1005.0 30 > th dose dependent rect. 17 1
220 187.51 radiation 1.0 4320 < th dose dependent rect. 3 1
236 188.25 temperature 25.0 90 < th dose dependent rect. 16 1
237 188.26 temperature 30.0 10 < th dose independent rect. 3 23
253 188.64 wind 9.0 1440 < th dose independent rect. 3 1
254 188.64 temperature 10.0 1440 > th dose independent rect. 3 1
257 188.64 temperature 30.0 1440 < th dose independent rect. 3 1
261 188.64 humidity 50.0 1440 > th dose independent rect. 3 1
270 188.64 atmosphere 995.0 1440 > th dose independent rect. 3 1
271 188.64 radiation 1.0 1440 < th dose independent rect. 3 1
291 188.64 temperature 10.0 1440 > th dose independent rect. 4 23
319 189.33 wind 1.0 1440 < th dose dependent rect. 16 6
324 189.42 atmosphere 995.0 30 > th dose independent rect. 3 23
358 190.33 wind 1.0 4320 < th dose independent rect. 21 1
363 190.37 precipitation 0.1 30 < th dose independent rect. 3 23
364 190.37 precipitation 0.1 30 < th dose dependent rect. 3 23
367 190.43 wind 1.0 1440 < th dose independent rect. 16 6
383 190.78 wind 1.0 1440 < th dose independent rect. 19 3
401 191.03 radiation 30.0 90 > th dose independent rect. 8 1
429 191.12 wind 1.0 4320 > th dose independent rect. 21 1
432 191.13 atmosphere 995.0 4320 > th dose independent rect. 11 3
444 191.25 wind 1.0 1440 > th dose independent rect. 19 3
446 191.28 radiation 40.0 30 > th dose independent sin 11 NA
490 191.38 temperature 25.0 10 < th dose dependent rect. 17 1
503 191.47 radiation 1.0 4320 < th dose dependent rect. 20 8
527 191.73 wind 1.0 1440 > th dose independent rect. 16 6
589 191.98 wind 1.0 270 < th dose independent rect. 6 1
603 192.14 wind 1.0 270 < th dose dependent rect. 6 1
610 192.16 wind 1.0 1440 < th dose dependent rect. 4 1
618 192.23 radiation 40.0 30 < th dose independent sin 11 NA
644 192.33 atmosphere 1010.0 10 < th dose independent sin 5 NA
652 192.38 atmosphere 1010.0 10 < th dose independent rect. 13 23
654 192.39 temperature 25.0 30 > th dose independent rect. 8 2
659 192.44 atmosphere 1010.0 10 < th dose independent rect. 3 23
689 192.53 atmosphere 1010.0 10 < th dose independent rect. 4 13
717 192.60 radiation 30.0 10 > th dose dependent rect. 10 1
722 192.63 radiation 1.0 4320 < th dose dependent rect. 23 1
745 192.69 precipitation 0.1 4320 > th dose dependent rect. 20 1
749 192.71 temperature 25.0 30 > th dose independent rect. 14 21
758 192.78 atmosphere 1010.0 10 < th dose independent rect. 4 6
763 192.81 atmosphere 995.0 4320 > th dose independent rect. 5 8
776 192.86 wind 1.0 270 < th dose independent rect. 6 16
784 192.89 atmosphere 1005.0 10 > th dose dependent rect. 9 1
796 192.95 temperature 25.0 90 < th dose independent rect. 16 1
845 193.01 temperature 10.0 30 > th dose dependent rect. 3 23
855 193.04 radiation 40.0 30 > th dose independent rect. 12 23
860 193.05 radiation 30.0 90 > th dose dependent rect. 7 2
897 193.07 atmosphere 1010.0 10 < th dose independent rect. 4 15
911 193.13 wind 1.0 10 > th dose independent rect. 13 23
915 193.15 atmosphere 995.0 4320 < th dose dependent rect. 14 1
961 193.22 atmosphere 1015.0 720 < th dose independent rect. 3 6
978 193.26 atmosphere 995.0 4320 < th dose independent rect. 14 1
991 193.29 humidity 50.0 720 > th dose independent rect. 21 18