Os09g0299000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CDPK substrate protein 1.
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Os09g0299000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CDPK substrate protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.33 | 0.263 | 13.1 | -0.433 | 0.903 | 0.241 | -0.112 | -0.928 | -0.0251 | 24 | 21.89 | 611 | -- | -- |
| 34.25 | 0.273 | 13 | -0.162 | 0.895 | 0.261 | -0.24 | -- | 0.0434 | 23.9 | 21.9 | 654 | -- | -- |
| 31.37 | 0.261 | 13.1 | -0.435 | 0.904 | 0.242 | -- | -0.948 | -0.0269 | 24 | 21.9 | 621 | -- | -- |
| 34.51 | 0.274 | 13 | -0.151 | 0.923 | 0.256 | -- | -- | 0.0436 | 24 | 21.65 | 483 | -- | -- |
| 79.73 | 0.416 | 13.1 | -0.455 | -- | 0.461 | -- | -0.975 | -0.0392 | -- | 21.87 | 806 | -- | -- |
| 37.09 | 0.285 | 13 | -0.0694 | 0.934 | -- | -0.301 | -- | 0.121 | 23.8 | -- | -- | -- | -- |
| 37.47 | 0.287 | 13 | -0.0577 | 0.935 | -- | -- | -- | 0.122 | 23.8 | -- | -- | -- | -- |
| 76.47 | 0.407 | 13.1 | -0.253 | -- | 0.608 | -- | -- | -0.1 | -- | 24.57 | 859 | -- | -- |
| 35.03 | 0.276 | 13 | -- | 0.931 | 0.228 | -- | -- | 0.068 | 24 | 21.6 | 446 | -- | -- |
| 92.53 | 0.449 | 13 | -0.0301 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 37.56 | 0.287 | 13 | -- | 0.935 | -- | -- | -- | 0.128 | 23.8 | -- | -- | -- | -- |
| 76.93 | 0.409 | 13.1 | -- | -- | 0.593 | -- | -- | -0.0732 | -- | 25 | 880 | -- | -- |
| 92.56 | 0.449 | 13 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.96 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 5 | 29.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 11 | 29.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 17 | 29.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 40 | 30.04 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 47 | 30.10 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 19 |
| 56 | 30.15 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 68 | 30.20 | temperature | 25 | 90 | < th | dose independent | sin | 7 | NA |
| 72 | 30.23 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 16 |
| 106 | 30.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 110 | 30.35 | radiation | 1 | 270 | < th | dose dependent | sin | 10 | NA |
| 142 | 30.46 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 13 |
| 243 | 30.71 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 21 |
| 283 | 30.80 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 331 | 30.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 344 | 30.96 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 351 | 30.97 | radiation | 1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 353 | 30.97 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 381 | 31.04 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 386 | 31.06 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 419 | 31.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 454 | 31.17 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 526 | 31.26 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 554 | 31.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 566 | 31.30 | humidity | 80 | 43200 | < th | dose dependent | sin | 2 | NA |
| 599 | 31.33 | temperature | 20 | 30 | > th | dose dependent | sin | 7 | NA |
| 621 | 31.35 | radiation | 30 | 270 | < th | dose independent | rect. | 14 | 10 |
| 669 | 31.39 | radiation | 1 | 270 | < th | dose independent | sin | 10 | NA |
| 670 | 31.39 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 671 | 31.39 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 676 | 31.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 717 | 31.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 726 | 31.42 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 728 | 31.42 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 734 | 31.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 742 | 31.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 752 | 31.43 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 803 | 31.45 | humidity | 70 | 43200 | > th | dose independent | sin | 3 | NA |
| 804 | 31.45 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 813 | 31.45 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 867 | 31.47 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 923 | 31.49 | humidity | 70 | 43200 | < th | dose independent | sin | 4 | NA |
| 981 | 31.50 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |