Os09g0298500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0298500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.78 | 0.619 | 3.79 | 0.2 | 0.416 | 0.576 | -0.146 | 3.81 | -0.11 | 23.8 | 30 | 1186 | -- | -- |
| 172.39 | 0.612 | 3.93 | -0.562 | 0.284 | 1.18 | -0.125 | -- | -0.35 | 23.7 | 26.25 | 1167 | -- | -- |
| 173.87 | 0.614 | 3.79 | 0.21 | 0.419 | 0.569 | -- | 3.83 | -0.111 | 23.9 | 30 | 1186 | -- | -- |
| 172.16 | 0.611 | 3.92 | -0.509 | 0.339 | 1.16 | -- | -- | -0.346 | 0.18 | 26.23 | 1164 | -- | -- |
| 184 | 0.632 | 3.78 | 0.332 | -- | 0.767 | -- | 3.83 | -0.0726 | -- | 28.06 | 1156 | -- | -- |
| 221.73 | 0.698 | 3.91 | -0.164 | 0.568 | -- | 0.186 | -- | -0.302 | 0.388 | -- | -- | -- | -- |
| 221.87 | 0.698 | 3.91 | -0.17 | 0.567 | -- | -- | -- | -0.302 | 0.301 | -- | -- | -- | -- |
| 177.79 | 0.621 | 3.92 | -0.549 | -- | 1.37 | -- | -- | -0.404 | -- | 25.4 | 1084 | -- | -- |
| 178.39 | 0.622 | 3.88 | -- | 0.386 | 1 | -- | -- | -0.204 | 0.323 | 27.77 | 1169 | -- | -- |
| 242.08 | 0.727 | 3.9 | -0.152 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 222.63 | 0.698 | 3.91 | -- | 0.564 | -- | -- | -- | -0.283 | 0.285 | -- | -- | -- | -- |
| 185.13 | 0.634 | 3.91 | -- | -- | 1.26 | -- | -- | -0.331 | -- | 25.52 | 1077 | -- | -- |
| 242.68 | 0.727 | 3.9 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 4 | 169.21 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 8 | 169.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 55 | 173.68 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 58 | 174.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 61 | 174.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 63 | 174.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 71 | 174.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 76 | 174.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 80 | 174.92 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 104 | 175.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 111 | 175.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 123 | 176.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 130 | 176.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 135 | 176.98 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 4 |
| 136 | 177.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 137 | 177.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 166 | 177.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 167 | 177.26 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 187 | 177.32 | temperature | 30 | 1440 | > th | dose dependent | sin | 0 | NA |
| 204 | 177.32 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 227 | 177.38 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 234 | 177.42 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 279 | 177.45 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 281 | 177.47 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 374 | 177.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 385 | 177.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 386 | 177.57 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 409 | 177.65 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 415 | 177.67 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 416 | 177.68 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 426 | 177.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 431 | 177.76 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 435 | 177.77 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 436 | 177.79 | temperature | 25 | 1440 | > th | dose dependent | sin | 8 | NA |
| 437 | 177.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 439 | 177.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 465 | 177.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 466 | 177.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 472 | 177.91 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 478 | 177.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 489 | 177.98 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 502 | 178.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 507 | 178.05 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 515 | 178.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 519 | 178.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 521 | 178.10 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 522 | 178.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 540 | 178.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 555 | 178.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 557 | 178.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 566 | 178.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 619 | 178.43 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 641 | 178.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 725 | 178.76 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 728 | 178.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 767 | 178.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 770 | 178.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 858 | 179.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 901 | 179.11 | temperature | 25 | 14400 | > th | dose dependent | sin | 13 | NA |
| 944 | 179.19 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 965 | 179.23 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 973 | 179.24 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |