Os09g0298400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os09g0298400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.37 | 0.267 | 10 | -0.06 | 0.255 | -0.926 | -0.552 | -0.3 | 0.00936 | 16.9 | 26.7 | 230 | -- | -- |
| 32.49 | 0.265 | 10 | -0.0907 | 0.247 | -0.9 | -0.453 | -- | 0.00693 | 16.9 | 26.9 | 215 | -- | -- |
| 33.01 | 0.268 | 10 | -0.0791 | 0.257 | -0.932 | -- | -0.138 | 0.00669 | 17.3 | 26.76 | 208 | -- | -- |
| 32.92 | 0.267 | 10 | -0.109 | 0.259 | -0.921 | -- | -- | -0.006 | 17.9 | 26.83 | 170 | -- | -- |
| 35.08 | 0.276 | 10 | -0.188 | -- | -1.1 | -- | 0.251 | -0.0116 | -- | 30.97 | 233 | -- | -- |
| 44.51 | 0.313 | 9.97 | 0.126 | 0.468 | -- | -0.437 | -- | 0.199 | 16.7 | -- | -- | -- | -- |
| 45 | 0.314 | 9.97 | 0.124 | 0.466 | -- | -- | -- | 0.196 | 16.7 | -- | -- | -- | -- |
| 35.1 | 0.276 | 10 | -0.151 | -- | -1.06 | -- | -- | -0.0229 | -- | 28.63 | 233 | -- | -- |
| 33.22 | 0.268 | 10 | -- | 0.266 | -0.891 | -- | -- | 0.0159 | 17.8 | 26.79 | 168 | -- | -- |
| 56.5 | 0.351 | 9.97 | 0.106 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 45.41 | 0.315 | 9.97 | -- | 0.463 | -- | -- | -- | 0.183 | 16.7 | -- | -- | -- | -- |
| 35.68 | 0.278 | 10 | -- | -- | -1.05 | -- | -- | 0.0158 | -- | 30.85 | 238 | -- | -- |
| 56.79 | 0.352 | 9.97 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 2 | 30.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 10 |
| 16 | 31.06 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 21 | 31.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 26 | 31.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 34 | 31.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 41 | 31.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 44 | 31.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 45 | 31.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 57 | 31.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 108 | 31.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 124 | 31.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 138 | 31.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 159 | 31.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 166 | 31.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 192 | 31.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 295 | 31.71 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 367 | 31.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 383 | 31.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 393 | 31.84 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 401 | 31.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 472 | 31.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 593 | 31.97 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 690 | 32.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 701 | 32.03 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 910 | 32.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 16 |