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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0297900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0477) R2 : 0.418
β1 : 2.18 (0.174) R2dD : 0.209 R2D : 0.152
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.73 (0.173) R2dE : 0.136 R2E : 0.0691
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.68 (0.774) R2dD*E : 0.165 R2D*E : 0.104
γ1 : 0.282 (0.104) R2dN8 : 0.0135 R2N8 : -0.0136
σ : 0.885
deviance : 361.28
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.043
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 7.49

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.5 0.877 3.82 2.13 0.347 -1.7 1.64 -8.91 0.285 15.4 9.003 4320 18 5.83
440.73 0.978 3.82 1.92 0.349 -1.38 1.23 -- 0.28 15.3 9.12 4320 19.5 5.69
356.17 0.879 3.82 2.16 0.341 -1.74 -- -8.74 0.292 15.2 9.01 4320 18 5.79
437.73 0.974 3.82 1.91 0.329 -1.56 -- -- 0.28 15.2 9.121 4320 20 5.73
361.28 0.885 3.82 2.18 -- -1.73 -- -8.68 0.282 -- 9.043 4320 18 7.49
502.32 1.05 3.8 1.91 0.408 -- 1.48 -- 0.188 13.7 -- -- -- --
510.89 1.06 3.79 1.96 0.409 -- -- -- 0.196 13.8 -- -- -- --
443.98 0.981 3.82 1.89 -- -1.59 -- -- 0.28 -- 9.122 4320 20 5.73
536.88 1.08 3.82 -- 0.329 -1.64 -- -- 0.28 15.2 9.136 4320 20 5.71
521.05 1.07 3.8 1.94 -- -- -- -- 0.187 -- -- -- -- --
612.06 1.16 3.84 -- 0.374 -- -- -- -0.0219 13.6 -- -- -- --
528.77 1.07 3.82 -- -- -1.58 -- -- 0.271 -- 9.302 4320 20 5.73
620.59 1.16 3.85 -- -- -- -- -- -0.0285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.81 wind 9 4320 < th dose independent rect. 18 6
3 349.90 wind 9 4320 < th dose independent rect. 18 9
4 350.01 wind 9 4320 > th dose independent rect. 18 5
6 350.19 wind 9 4320 > th dose independent rect. 18 8
11 350.48 wind 9 4320 > th dose dependent rect. 18 8
13 350.50 wind 9 4320 > th dose dependent rect. 18 6
20 351.51 wind 9 4320 < th dose independent rect. 18 3
25 358.24 wind 9 4320 < th dose independent rect. 20 4
28 358.69 wind 7 4320 < th dose independent rect. 20 1
30 359.23 wind 9 4320 < th dose independent rect. 20 7
31 359.36 wind 5 4320 > th dose dependent rect. 20 3
59 360.59 wind 9 4320 > th dose independent rect. 20 1
129 367.50 humidity 90 1440 < th dose dependent rect. 3 4
135 368.56 humidity 90 1440 < th dose dependent rect. 5 2
138 368.90 radiation 20 1440 > th dose independent rect. 6 1
156 370.66 humidity 80 1440 > th dose independent rect. 6 1
162 371.71 atmosphere 995 14400 > th dose independent rect. 17 3
166 372.35 atmosphere 995 14400 < th dose independent rect. 18 1
169 372.35 atmosphere 995 14400 < th dose dependent rect. 18 1
184 373.52 humidity 90 1440 < th dose dependent rect. 3 1
201 374.22 humidity 90 1440 < th dose dependent rect. 23 9
231 380.92 humidity 80 1440 < th dose independent rect. 22 2
232 380.93 humidity 80 1440 < th dose independent rect. 21 11
243 381.89 atmosphere 995 14400 > th dose independent rect. 9 12
288 382.68 humidity 50 1440 > th dose dependent rect. 5 2
302 383.04 humidity 80 1440 < th dose independent rect. 21 5
310 383.34 wind 5 1440 > th dose independent rect. 7 16
311 383.45 humidity 80 720 < th dose dependent rect. 21 2
317 383.69 humidity 80 720 < th dose independent sin 11 NA
324 384.05 temperature 20 1440 > th dose independent rect. 18 1
338 385.16 wind 5 1440 < th dose independent rect. 7 16
344 385.41 temperature 20 720 < th dose independent rect. 18 2
405 386.41 wind 7 1440 > th dose independent rect. 8 1
408 386.61 humidity 80 720 < th dose dependent rect. 20 7
427 387.12 wind 5 1440 > th dose independent rect. 7 8
456 387.63 humidity 50 1440 > th dose dependent rect. 1 7
458 387.65 humidity 70 1440 > th dose dependent rect. 1 7
477 388.25 wind 5 1440 < th dose independent rect. 7 8
546 389.76 humidity 80 1440 < th dose independent rect. 6 1
551 389.87 wind 5 1440 > th dose independent sin 1 NA
565 390.17 humidity 80 1440 > th dose independent rect. 22 10
568 390.23 humidity 80 270 < th dose independent rect. 21 10
592 390.74 wind 5 1440 > th dose dependent rect. 8 1
607 391.11 wind 5 1440 > th dose independent rect. 17 23
610 391.19 wind 5 1440 > th dose independent rect. 19 23
625 391.37 radiation 1 14400 < th dose dependent rect. 20 7
626 391.38 wind 5 1440 > th dose independent rect. 11 23
627 391.39 wind 5 1440 > th dose independent rect. 12 2
650 391.81 humidity 80 10 < th dose independent rect. 20 11
656 391.90 wind 5 1440 < th dose independent sin 0 NA
674 392.21 wind 5 1440 > th dose independent no NA NA
683 392.31 radiation 1 14400 < th dose dependent rect. 22 5
766 393.29 humidity 80 720 < th dose independent rect. 19 19
797 393.82 humidity 80 720 > th dose independent sin 10 NA
818 394.11 wind 5 1440 < th dose independent rect. 19 23
837 394.25 wind 5 1440 < th dose independent rect. 17 23
857 394.53 wind 5 1440 < th dose independent rect. 11 23
860 394.56 wind 7 1440 < th dose independent rect. 8 1
870 394.75 humidity 80 30 < th dose independent sin 10 NA
895 395.09 wind 5 1440 < th dose independent no NA NA
958 395.73 atmosphere 995 14400 < th dose independent sin 22 NA
967 395.86 atmosphere 995 14400 > th dose independent sin 22 NA
976 395.98 wind 7 1440 > th dose independent rect. 1 8
983 396.06 wind 5 1440 < th dose independent rect. 12 2