FiT-DB / Search/ Help/ Sample detail
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Os09g0294000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 485.18 | 1.03 | 11.1 | -2.99 | 3.3 | -3.75 | 1.58 | 13.1 | -0.241 | 10.7 | 23.7 | 871 | 19.3 | -- |
| 556.65 | 1.1 | 11.3 | -5.08 | 3.42 | -3.17 | -0.149 | -- | -0.724 | 10 | 15.35 | 2075 | 13.8 | -- |
| 484.99 | 1.03 | 11 | -2.2 | 3.66 | -3.62 | -- | 16 | -0.143 | 10.3 | 25.66 | 1013 | 23.9 | -- |
| 555.65 | 1.1 | 11.3 | -5.07 | 3.37 | -3.22 | -- | -- | -0.738 | 9.94 | 14.07 | 2001 | 13 | -- |
| 918.08 | 1.41 | 10.9 | -0.97 | -- | -7.01 | -- | 23.5 | 0.616 | -- | 22.15 | 706 | 13.1 | -- |
| 691.93 | 1.23 | 11.4 | -5.98 | 4.39 | -- | 0.433 | -- | -1.2 | 9.81 | -- | -- | -- | -- |
| 692.65 | 1.23 | 11.4 | -5.96 | 4.39 | -- | -- | -- | -1.2 | 9.8 | -- | -- | -- | -- |
| 558.66 | 1.1 | 11.5 | -5.05 | -- | -6.29 | -- | -- | -0.884 | -- | -1.927 | 966 | 16.4 | -- |
| 752.85 | 1.28 | 10.9 | -- | 4.34 | -4.74 | -- | -- | 0.857 | 9.74 | -30.9 | 47520 | 4.13 | -- |
| 1843.38 | 2.01 | 11.5 | -6.01 | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
| 1629.26 | 1.89 | 11.2 | -- | 4.41 | -- | -- | -- | -0.533 | 9.9 | -- | -- | -- | -- |
| 761.54 | 1.29 | 11 | -- | -- | -9.03 | -- | -- | 0.872 | -- | -213600 | 47520 | 8.24 | -- |
| 2794.8 | 2.47 | 11.4 | -- | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 494.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 3 | 494.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 43 | 500.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 58 | 501.20 | temperature | 25 | 720 | > th | dose dependent | sin | 23 | NA |
| 60 | 501.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 61 | 501.29 | temperature | 20 | 90 | > th | dose dependent | sin | 15 | NA |
| 73 | 501.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 93 | 502.08 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 12 |
| 125 | 502.88 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 154 | 506.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 202 | 510.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 204 | 510.59 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 206 | 510.64 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 215 | 511.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 248 | 512.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 252 | 512.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 263 | 513.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 267 | 513.74 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 274 | 513.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 293 | 515.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 296 | 515.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 319 | 516.76 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 332 | 517.53 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 337 | 517.57 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 340 | 517.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 342 | 517.59 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 356 | 518.18 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 390 | 519.27 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 414 | 520.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 423 | 520.84 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 471 | 521.09 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 565 | 523.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 568 | 523.84 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 18 |
| 606 | 524.43 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 696 | 525.15 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 813 | 525.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 862 | 526.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 870 | 526.47 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 874 | 526.62 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 885 | 526.95 | radiation | 20 | 43200 | > th | dose dependent | sin | 10 | NA |
| 946 | 527.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 947 | 527.37 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 985 | 527.75 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
