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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0292300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0394) R2 : 0.245
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.723 (0.103) R2dC : 0.0837 R2C : 0.0454
β3 : -1.96 (0.191) R2dE : 0.198 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0141 (0.0863) R2dN8 : 6.29e-05 R2N8 : 0.00178
σ : 0.732
deviance : 247.34
__
_____
C
peak time of C : 5.32
E
wheather : temperature
threshold : 23.89
memory length : 285
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.94 0.738 4.35 0.078 0.723 -2.03 0.376 -0.532 0.035 5.42 23.78 280 -- --
247.23 0.732 4.36 0.0101 0.722 -1.97 0.3 -- 0.0233 5.41 23.8 286 -- --
247.2 0.732 4.36 0.0519 0.726 -2.02 -- -0.37 0.0272 5.29 23.8 281 -- --
247.34 0.732 4.36 0.00636 0.723 -1.96 -- -- 0.015 5.32 23.89 285 -- --
273.57 0.77 4.36 0.111 -- -1.75 -- -0.127 0.0863 -- 23.7 285 -- --
297.32 0.808 4.29 0.481 0.543 -- 0.635 -- 0.346 6.26 -- -- -- --
298.12 0.809 4.29 0.486 0.55 -- -- -- 0.342 5.87 -- -- -- --
273.58 0.77 4.36 0.0912 -- -1.73 -- -- 0.0796 -- 23.7 286 -- --
247.34 0.732 4.36 -- 0.723 -1.96 -- -- 0.0141 5.32 23.89 285 -- --
313.77 0.828 4.3 0.503 -- -- -- -- 0.355 -- -- -- -- --
304.35 0.816 4.3 -- 0.557 -- -- -- 0.288 5.83 -- -- -- --
273.78 0.771 4.36 -- -- -1.77 -- -- 0.0649 -- 23.7 286 -- --
320.44 0.836 4.31 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.72 temperature 20 4320 > th dose independent rect. 19 4
2 242.78 temperature 20 4320 < th dose independent rect. 19 4
3 242.92 temperature 20 4320 > th dose independent rect. 20 1
5 243.39 temperature 20 4320 < th dose independent rect. 20 1
11 243.66 temperature 25 270 < th dose dependent rect. 21 20
14 243.81 temperature 25 270 < th dose dependent rect. 21 14
22 244.78 temperature 25 270 < th dose dependent rect. 21 16
55 246.60 temperature 25 270 < th dose dependent sin 8 NA
65 246.94 temperature 15 10 > th dose dependent sin 7 NA
71 247.19 temperature 15 270 > th dose dependent sin 9 NA
73 247.21 temperature 30 10 < th dose dependent sin 7 NA
112 248.22 temperature 25 270 < th dose dependent rect. 7 23
115 248.30 temperature 25 270 < th dose dependent rect. 15 22
127 248.61 temperature 25 270 < th dose dependent no NA NA
155 249.05 temperature 25 10 < th dose dependent rect. 22 20
179 249.44 temperature 20 270 > th dose independent rect. 13 22
210 250.03 temperature 25 270 < th dose dependent rect. 3 23
218 250.31 temperature 25 720 < th dose dependent sin 12 NA
219 250.32 temperature 25 720 < th dose dependent rect. 17 15
233 250.60 temperature 25 10 < th dose dependent rect. 22 14
265 250.90 temperature 20 270 < th dose independent rect. 21 20
282 251.06 humidity 90 14400 > th dose independent rect. 10 1
305 251.28 temperature 25 720 < th dose dependent rect. 19 10
312 251.30 temperature 25 10 < th dose dependent rect. 20 22
331 251.42 temperature 20 90 > th dose independent sin 7 NA
333 251.43 temperature 20 270 < th dose independent rect. 21 14
336 251.43 temperature 25 270 < th dose dependent rect. 1 23
363 251.70 temperature 20 4320 > th dose independent sin 18 NA
371 251.75 temperature 20 270 > th dose independent sin 11 NA
373 251.75 temperature 15 720 > th dose dependent rect. 18 15
374 251.76 temperature 25 10 < th dose dependent rect. 11 22
429 252.18 temperature 20 90 > th dose independent rect. 23 12
436 252.21 temperature 25 720 < th dose dependent rect. 20 7
466 252.42 temperature 25 30 < th dose dependent rect. 14 23
472 252.45 temperature 25 1440 < th dose dependent rect. 21 1
478 252.50 temperature 20 4320 < th dose independent sin 18 NA
496 252.60 temperature 20 90 < th dose independent rect. 23 16
515 252.75 temperature 20 270 > th dose independent rect. 21 13
541 252.89 temperature 25 1440 < th dose dependent rect. 17 6
542 252.89 temperature 15 270 > th dose dependent rect. 21 12
561 253.02 temperature 25 1440 < th dose dependent rect. 19 4
606 253.18 temperature 25 30 < th dose dependent rect. 7 23
626 253.28 temperature 25 30 < th dose dependent rect. 1 23
637 253.32 temperature 20 270 < th dose independent sin 9 NA
652 253.37 temperature 25 1440 < th dose dependent rect. 3 7
679 253.51 temperature 25 4320 < th dose dependent rect. 17 1
753 253.82 temperature 20 720 > th dose independent rect. 23 2
784 253.90 temperature 20 90 > th dose independent rect. 3 23
795 253.94 temperature 25 30 < th dose dependent rect. 3 23
814 254.00 temperature 20 1440 > th dose independent rect. 19 13
816 254.00 temperature 20 270 > th dose independent rect. 16 17
866 254.18 temperature 20 10 > th dose independent sin 6 NA
976 254.45 temperature 20 1440 < th dose independent rect. 19 13