Os09g0286400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger subfamily protein.
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Os09g0286400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger subfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.96 | 0.215 | 11.4 | 0.115 | 0.636 | -0.519 | 0.179 | 0.648 | 0.214 | 11.6 | 29.9 | 93 | -- | -- |
| 21.43 | 0.217 | 11.4 | 0.236 | 0.604 | -0.516 | 0.0264 | -- | 0.246 | 11.7 | 29.9 | 93 | -- | -- |
| 21.07 | 0.214 | 11.4 | 0.141 | 0.631 | -0.528 | -- | 0.526 | 0.216 | 11.5 | 29.8 | 95 | -- | -- |
| 21.38 | 0.215 | 11.4 | 0.228 | 0.632 | -0.528 | -- | -- | 0.238 | 11.5 | 29.5 | 95 | -- | -- |
| 39.01 | 0.292 | 11.4 | 0.0581 | -- | -1.02 | -- | 0.296 | 0.13 | -- | 29.8 | 95 | -- | -- |
| 25.08 | 0.235 | 11.3 | 0.357 | 0.751 | -- | 0.0458 | -- | 0.346 | 12.2 | -- | -- | -- | -- |
| 25.09 | 0.235 | 11.3 | 0.359 | 0.751 | -- | -- | -- | 0.346 | 12.2 | -- | -- | -- | -- |
| 39.13 | 0.293 | 11.4 | 0.108 | -- | -1.02 | -- | -- | 0.143 | -- | 29.8 | 95 | -- | -- |
| 22.6 | 0.221 | 11.4 | -- | 0.607 | -0.627 | -- | -- | 0.197 | 11.4 | 29.5 | 95 | -- | -- |
| 60.53 | 0.364 | 11.4 | 0.334 | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
| 28.48 | 0.25 | 11.4 | -- | 0.746 | -- | -- | -- | 0.306 | 12.2 | -- | -- | -- | -- |
| 39.24 | 0.292 | 11.4 | -- | -- | -1.06 | -- | -- | 0.127 | -- | 30 | 2 | -- | -- |
| 63.48 | 0.372 | 11.4 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 2 | 20.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 4 | 20.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 5 | 20.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 6 | 20.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 10 | 20.45 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 17 | 20.50 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 18 | 20.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 25 | 20.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 31 | 20.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 68 | 20.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 80 | 20.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 144 | 20.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 201 | 20.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 241 | 20.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 286 | 20.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 297 | 20.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 306 | 20.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 327 | 20.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 328 | 20.96 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 338 | 20.97 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 376 | 20.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 16 |
| 383 | 20.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 385 | 20.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 456 | 21.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 486 | 21.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 488 | 21.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 495 | 21.06 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 499 | 21.07 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 502 | 21.07 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 526 | 21.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 528 | 21.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 744 | 21.18 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 930 | 21.23 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 967 | 21.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 973 | 21.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 974 | 21.25 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |