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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0285800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.192) R2 : 0.156
β1 : 3.12 (0.417) R2dD : 1.14 R2D : -5.91
β2 : -- (--) R2dC : -- R2C : --
β3 : 177 (21.8) R2dE : 511 R2E : -507
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 366 (45.5) R2dD*E : 499 R2D*E : -503
γ1 : -0.0881 (0.0749) R2dN8 : 0.00346 R2N8 : -4.55
σ : 0.654
deviance : 197.16
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20
memory length : 12
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10
open length of G : 3.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.98 0.659 4.41 3.12 0.00257 177 0.238 366 -0.0886 20.9 20 11 10 3
223.76 0.702 2.89 -0.0613 0.00163 1.4 -0.266 -- -0.0911 8.86 20 11 10 3
197.16 0.654 4.41 3.12 0.0044 177 -- 366 -0.0876 16.3 20 12 10 3
223.77 0.697 2.89 -0.0577 0.0025 1.45 -- -- -0.0879 20.8 20.41 38 9.81 3.1
197.16 0.654 4.41 3.12 -- 177 -- 366 -0.0881 -- 20 12 10 3.01
230.74 0.712 2.89 -0.156 0.0437 -- -0.486 -- -0.117 10.9 -- -- -- --
231.71 0.713 2.89 -0.175 0.0494 -- -- -- -0.118 12.5 -- -- -- --
223.77 0.697 2.89 -0.0576 -- 1.44 -- -- -0.0879 -- 20.42 38 9.81 3.13
223.85 0.697 2.89 -- 0.00532 1.48 -- -- -0.0806 19.8 20.5 40 9.8 3.06
231.86 0.712 2.89 -0.177 -- -- -- -- -0.119 -- -- -- -- --
232.52 0.713 2.89 -- 0.052 -- -- -- -0.0983 12.6 -- -- -- --
223.85 0.697 2.89 -- -- 1.47 -- -- -0.0811 -- 20.5 40 9.8 3.18
232.69 0.712 2.89 -- -- -- -- -- -0.099 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.99 temperature 20.0 10 < th dose independent rect. 10 3
2 197.01 temperature 20.0 90 < th dose independent rect. 10 1
6 197.05 temperature 20.0 30 < th dose dependent rect. 10 2
21 197.14 humidity 90.0 90 > th dose independent rect. 10 1
23 197.14 precipitation 0.1 90 > th dose independent rect. 10 1
44 197.14 humidity 90.0 90 > th dose dependent rect. 10 1
46 197.14 precipitation 0.1 90 > th dose dependent rect. 10 1
78 204.16 temperature 30.0 10 > th dose independent rect. 13 3
95 210.28 temperature 30.0 10 > th dose independent rect. 14 1
99 210.74 wind 1.0 90 < th dose dependent rect. 13 1
102 211.72 temperature 15.0 720 < th dose dependent rect. 24 1
103 211.77 temperature 15.0 720 < th dose independent rect. 24 1
118 212.92 wind 1.0 90 < th dose independent rect. 13 1
203 216.37 temperature 15.0 720 > th dose independent sin 6 NA
229 217.15 temperature 15.0 720 > th dose independent sin 4 NA
230 217.15 humidity 70.0 43200 > th dose independent rect. 13 1
281 217.92 temperature 15.0 720 < th dose independent sin 6 NA
282 217.93 temperature 15.0 720 < th dose dependent sin 4 NA
304 218.37 atmosphere 1005.0 30 > th dose dependent rect. 18 1
322 218.60 temperature 30.0 10 > th dose independent rect. 13 22
358 219.09 temperature 30.0 30 < th dose independent rect. 18 1
361 219.20 humidity 70.0 30 > th dose independent rect. 18 1
375 219.28 humidity 50.0 30 > th dose dependent rect. 18 1
383 219.42 temperature 25.0 30 > th dose independent rect. 18 1
393 219.49 atmosphere 1000.0 10 < th dose independent rect. 13 1
402 219.53 temperature 10.0 1440 > th dose independent rect. 19 1
405 219.53 temperature 30.0 1440 < th dose independent rect. 19 1
409 219.53 humidity 50.0 1440 > th dose independent rect. 19 1
411 219.53 humidity 80.0 30 < th dose independent rect. 18 1
412 219.53 atmosphere 995.0 1440 > th dose independent rect. 19 1
416 219.53 radiation 1.0 1440 < th dose independent rect. 19 1
436 219.53 temperature 10.0 1440 > th dose independent rect. 20 23
439 219.53 radiation 1.0 1440 < th dose dependent rect. 19 1
456 219.59 radiation 1.0 30 < th dose dependent rect. 18 1
485 219.68 wind 7.0 30 < th dose independent rect. 18 1
486 219.68 atmosphere 1005.0 30 > th dose independent rect. 18 1
504 219.72 radiation 1.0 30 < th dose independent rect. 18 1
517 219.81 wind 9.0 30 < th dose dependent rect. 18 1
526 219.87 wind 1.0 30 > th dose independent rect. 18 1
528 219.87 temperature 10.0 30 > th dose independent rect. 18 1
531 219.87 atmosphere 1010.0 30 < th dose independent rect. 18 1
536 219.87 precipitation 0.1 30 < th dose independent rect. 18 1
540 219.87 temperature 10.0 30 > th dose independent rect. 19 23
541 219.87 temperature 20.0 30 > th dose dependent rect. 18 1
542 219.87 precipitation 0.1 30 < th dose dependent rect. 18 1
543 219.88 atmosphere 995.0 30 > th dose independent rect. 18 1
546 219.88 temperature 10.0 30 > th dose dependent rect. 18 1
596 220.13 wind 1.0 30 > th dose dependent rect. 18 1
619 220.26 humidity 90.0 30 < th dose dependent rect. 18 1
625 220.32 atmosphere 1015.0 30 < th dose dependent rect. 18 1
653 220.49 temperature 15.0 720 < th dose dependent sin 15 NA
655 220.51 atmosphere 995.0 30 > th dose independent rect. 19 23
673 220.68 radiation 20.0 10 > th dose independent rect. 13 1
676 220.69 humidity 60.0 43200 > th dose dependent rect. 13 1
679 220.72 humidity 60.0 43200 > th dose dependent rect. 12 3
711 220.98 temperature 30.0 30 < th dose dependent rect. 18 1
736 221.16 atmosphere 1015.0 4320 > th dose independent rect. 15 1
738 221.16 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
748 221.22 temperature 15.0 720 > th dose independent sin 13 NA
783 221.37 humidity 80.0 43200 < th dose independent rect. 7 16
785 221.37 humidity 70.0 43200 > th dose dependent rect. 14 7
790 221.42 temperature 15.0 720 > th dose independent no NA NA
797 221.43 humidity 70.0 43200 > th dose dependent rect. 13 9
810 221.52 temperature 25.0 10 > th dose dependent rect. 13 1
840 221.63 humidity 80.0 43200 > th dose independent rect. 6 17
864 221.77 humidity 80.0 43200 > th dose independent rect. 13 10
916 221.93 atmosphere 1015.0 4320 > th dose dependent rect. 14 3
921 221.95 humidity 80.0 43200 > th dose independent rect. 14 8
924 221.95 humidity 70.0 43200 > th dose dependent rect. 7 16
939 221.99 humidity 70.0 43200 > th dose dependent rect. 17 2
969 222.11 humidity 80.0 43200 < th dose independent sin 19 NA
979 222.14 humidity 80.0 43200 > th dose independent sin 19 NA
986 222.16 humidity 80.0 43200 < th dose independent rect. 14 8
993 222.17 humidity 80.0 720 < th dose dependent rect. 23 2