Os09g0285100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0285100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.34 | 0.302 | 10.2 | 0.73 | 0.474 | -1.34 | -0.353 | -0.186 | 0.305 | 18.8 | 15 | 99 | -- | -- |
| 41.37 | 0.3 | 10.1 | 0.754 | 0.473 | -1.35 | -0.355 | -- | 0.312 | 18.8 | 15 | 99 | -- | -- |
| 41.64 | 0.301 | 10.2 | 0.733 | 0.478 | -1.35 | -- | -0.238 | 0.302 | 18.7 | 15 | 100 | -- | -- |
| 41.71 | 0.301 | 10.1 | 0.766 | 0.482 | -1.36 | -- | -- | 0.313 | 18.7 | 15.1 | 105 | -- | -- |
| 49.75 | 0.33 | 10.1 | 0.683 | -- | -1.14 | -- | -0.111 | 0.274 | -- | 15.53 | 19 | -- | -- |
| 61.04 | 0.366 | 10.2 | 0.471 | 0.39 | -- | -0.212 | -- | 0.117 | 22.2 | -- | -- | -- | -- |
| 61.2 | 0.366 | 10.2 | 0.479 | 0.391 | -- | -- | -- | 0.117 | 22.3 | -- | -- | -- | -- |
| 49.67 | 0.328 | 10.1 | 0.702 | -- | -1.15 | -- | -- | 0.279 | -- | 15.3 | 3 | -- | -- |
| 54.81 | 0.347 | 10.2 | -- | 0.359 | -0.883 | -- | -- | 0.194 | 19 | 19.61 | 99 | -- | -- |
| 70.5 | 0.392 | 10.2 | 0.485 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 67.25 | 0.384 | 10.2 | -- | 0.393 | -- | -- | -- | 0.0641 | 22.4 | -- | -- | -- | -- |
| 61.45 | 0.366 | 10.2 | -- | -- | -0.816 | -- | -- | 0.177 | -- | 19.42 | 2 | -- | -- |
| 76.7 | 0.409 | 10.2 | -- | -- | -- | -- | -- | 0.0646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 2 | 38.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 3 | 38.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 15 |
| 5 | 39.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 7 | 39.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 8 | 39.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 24 | 39.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 45 | 40.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 58 | 40.52 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 81 | 40.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 88 | 40.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 94 | 40.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 101 | 40.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 108 | 40.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 148 | 41.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 161 | 41.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 163 | 41.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 167 | 41.39 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 168 | 41.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 176 | 41.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 190 | 41.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 213 | 41.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 214 | 41.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 219 | 41.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 221 | 41.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 226 | 41.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 233 | 41.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 276 | 41.73 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 303 | 41.82 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 305 | 41.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 368 | 41.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 421 | 42.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 496 | 42.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 529 | 42.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 536 | 42.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 541 | 42.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 645 | 42.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 694 | 42.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 745 | 42.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 746 | 42.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 862 | 42.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 863 | 42.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |