Os09g0284200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine protein phosphatase PP-X isozyme 2 (EC 3.1.3.16).
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Os09g0284200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine protein phosphatase PP-X isozyme 2 (EC 3.1.3.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.16 | 0.298 | 11 | -0.83 | 0.383 | -1.27 | -0.49 | 0.646 | -0.278 | 6.43 | 28.94 | 83 | -- | -- |
| 40.64 | 0.297 | 11 | -0.712 | 0.365 | -1.25 | -0.411 | -- | -0.247 | 6.5 | 28.62 | 63 | -- | -- |
| 40.69 | 0.297 | 11 | -0.811 | 0.376 | -1.25 | -- | 0.536 | -0.268 | 6.73 | 28.91 | 79 | -- | -- |
| 41.02 | 0.298 | 11 | -0.719 | 0.367 | -1.26 | -- | -- | -0.246 | 6.61 | 28.75 | 63 | -- | -- |
| 45.88 | 0.317 | 11 | -0.757 | -- | -1.1 | -- | 0.542 | -0.227 | -- | 28.91 | 79 | -- | -- |
| 62.61 | 0.371 | 10.9 | -0.409 | 0.384 | -- | 0.0495 | -- | 0.0168 | 11 | -- | -- | -- | -- |
| 62.62 | 0.371 | 10.9 | -0.407 | 0.384 | -- | -- | -- | 0.0169 | 10.9 | -- | -- | -- | -- |
| 46.23 | 0.318 | 11 | -0.67 | -- | -1.13 | -- | -- | -0.225 | -- | 27.43 | 44 | -- | -- |
| 52.94 | 0.341 | 11 | -- | 0.284 | -0.946 | -- | -- | -0.106 | 7.54 | 28.75 | 63 | -- | -- |
| 71.79 | 0.396 | 11 | -0.415 | -- | -- | -- | -- | 0.0142 | -- | -- | -- | -- | -- |
| 66.98 | 0.383 | 10.9 | -- | 0.388 | -- | -- | -- | 0.0622 | 11 | -- | -- | -- | -- |
| 57.18 | 0.352 | 11 | -- | -- | -0.938 | -- | -- | -0.105 | -- | 28.34 | 2 | -- | -- |
| 76.33 | 0.408 | 10.9 | -- | -- | -- | -- | -- | 0.0603 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 2 | 39.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 5 | 39.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 7 | 39.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 39 | 39.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 100 | 39.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 131 | 39.52 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 167 | 39.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 211 | 39.65 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 216 | 39.66 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 244 | 39.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 270 | 39.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 277 | 39.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 291 | 39.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 302 | 39.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 303 | 39.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 331 | 39.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 336 | 39.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 415 | 40.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 488 | 40.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 520 | 40.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 531 | 40.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 532 | 40.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 552 | 40.28 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 612 | 40.40 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 678 | 40.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 691 | 40.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 715 | 40.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 740 | 40.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 753 | 40.66 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |