Os09g0281900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thyroid hormone receptor-associated protein complex component TRAP170- like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0281900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Thyroid hormone receptor-associated protein complex component TRAP170- like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.09 | 0.216 | 10.9 | 1.42 | 0.0404 | 0.482 | -0.549 | 1.51 | 0.331 | 5.87 | 20.42 | 1614 | -- | -- |
| 24.98 | 0.233 | 11 | 1.16 | 0.0538 | 0.297 | -0.534 | -- | 0.269 | 5.45 | 21.8 | 1994 | -- | -- |
| 21.37 | 0.215 | 10.9 | 1.46 | 0.0613 | 0.418 | -- | 1.42 | 0.338 | 8.26 | 21.1 | 1897 | -- | -- |
| 25.31 | 0.234 | 11 | 1.15 | 0.04 | 0.289 | -- | -- | 0.237 | 8.86 | 24.5 | 1542 | -- | -- |
| 21.41 | 0.216 | 10.9 | 1.49 | -- | 0.385 | -- | 1.4 | 0.341 | -- | 21.34 | 1870 | -- | -- |
| 27.06 | 0.244 | 10.9 | 1.26 | 0.035 | -- | -0.592 | -- | 0.336 | 5.92 | -- | -- | -- | -- |
| 27.87 | 0.247 | 10.9 | 1.26 | 0.0414 | -- | -- | -- | 0.339 | 8.56 | -- | -- | -- | -- |
| 25.41 | 0.235 | 11 | 1.16 | -- | 0.285 | -- | -- | 0.237 | -- | 24.52 | 1522 | -- | -- |
| 33.71 | 0.27 | 11 | -- | 0.0525 | 0.894 | -- | -- | -0.0931 | 9.77 | 21.1 | 47520 | -- | -- |
| 27.97 | 0.247 | 10.9 | 1.26 | -- | -- | -- | -- | 0.339 | -- | -- | -- | -- | -- |
| 69.72 | 0.391 | 11 | -- | 0.052 | -- | -- | -- | 0.199 | 6.69 | -- | -- | -- | -- |
| 33.87 | 0.271 | 11 | -- | -- | 0.892 | -- | -- | -0.0927 | -- | 21.05 | 47520 | -- | -- |
| 69.86 | 0.39 | 11 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 2 | 20.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 4 | 20.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 28 | 20.90 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 29 | 20.95 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 30 | 20.95 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 57 | 21.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 64 | 21.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 68 | 21.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 72 | 21.20 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 81 | 21.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 98 | 21.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 129 | 21.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 137 | 21.29 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 217 | 21.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 22 |
| 244 | 21.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 285 | 21.38 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 294 | 21.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 314 | 21.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 350 | 21.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 366 | 21.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 398 | 21.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 399 | 21.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 409 | 21.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 435 | 21.46 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 472 | 21.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 513 | 21.49 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 608 | 21.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 724 | 21.61 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 733 | 21.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 776 | 21.64 | temperature | 20 | 1440 | > th | dose independent | sin | 22 | NA |