Os09g0280500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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Os09g0280500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.29 | 0.421 | 7.52 | 0.664 | 0.916 | 0.696 | -1.23 | -0.678 | 0.199 | 7.2 | 39.72 | 49 | -- | -- |
| 81.2 | 0.42 | 7.52 | 0.682 | 0.919 | 0.716 | -1.11 | -- | 0.205 | 7.12 | 39.78 | 49 | -- | -- |
| 84.14 | 0.427 | 7.52 | 0.667 | 0.909 | 0.672 | -- | -0.46 | 0.201 | 7.07 | 39.72 | 49 | -- | -- |
| 84.47 | 0.428 | 7.51 | 0.662 | 0.916 | 0.708 | -- | -- | 0.208 | 7.07 | 39.8 | 49 | -- | -- |
| 94.67 | 0.453 | 7.51 | 0.85 | -- | 0.922 | -- | -1.53 | 0.38 | -- | 37.8 | 715 | -- | -- |
| 90.73 | 0.447 | 7.52 | 0.711 | 0.905 | -- | -1.12 | -- | 0.205 | 6.29 | -- | -- | -- | -- |
| 93.8 | 0.454 | 7.52 | 0.697 | 0.901 | -- | -- | -- | 0.209 | 6.2 | -- | -- | -- | -- |
| 93.46 | 0.45 | 7.51 | 0.719 | -- | 1.13 | -- | -- | 0.339 | -- | 19.66 | 746 | -- | -- |
| 96.22 | 0.457 | 7.51 | -- | 0.889 | 0.765 | -- | -- | 0.182 | 7.11 | 39.78 | 49 | -- | -- |
| 135.86 | 0.545 | 7.53 | 0.722 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 106.62 | 0.483 | 7.53 | -- | 0.91 | -- | -- | -- | 0.131 | 6.16 | -- | -- | -- | -- |
| 107.76 | 0.483 | 7.52 | -- | -- | 0.985 | -- | -- | 0.258 | -- | 19.52 | 752 | -- | -- |
| 149.62 | 0.571 | 7.55 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.86 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 2 | 77.12 | radiation | 40 | 30 | < th | dose independent | rect. | 4 | 18 |
| 4 | 77.23 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 7 | 77.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 27 | 78.18 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 34 | 78.28 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 10 |
| 36 | 78.31 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 39 | 78.33 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 41 | 78.34 | radiation | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 56 | 78.37 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 57 | 78.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 62 | 78.49 | radiation | 30 | 270 | < th | dose independent | sin | 6 | NA |
| 77 | 78.62 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 91 | 78.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 97 | 78.75 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 22 |
| 126 | 78.91 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 146 | 79.05 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 166 | 79.11 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 172 | 79.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 179 | 79.16 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 220 | 79.30 | radiation | 40 | 30 | < th | dose independent | rect. | 23 | 23 |
| 236 | 79.31 | humidity | 60 | 30 | > th | dose independent | rect. | 4 | 18 |
| 239 | 79.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 246 | 79.37 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 21 |
| 279 | 79.43 | radiation | 40 | 10 | < th | dose independent | rect. | 14 | 22 |
| 329 | 79.58 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 331 | 79.60 | radiation | 40 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 359 | 79.71 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 368 | 79.74 | radiation | 40 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 379 | 79.78 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 10 |
| 381 | 79.78 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 410 | 79.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 425 | 79.89 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 23 |
| 434 | 79.91 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 460 | 79.98 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 4 |
| 477 | 80.01 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 506 | 80.08 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 8 |
| 530 | 80.10 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 7 |
| 551 | 80.11 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 636 | 80.20 | humidity | 50 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 644 | 80.21 | humidity | 50 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 648 | 80.22 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 16 |
| 694 | 80.26 | radiation | 40 | 720 | < th | dose independent | rect. | 19 | 18 |
| 697 | 80.26 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 704 | 80.28 | radiation | 30 | 270 | > th | dose independent | sin | 8 | NA |
| 769 | 80.33 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 938 | 80.50 | radiation | 1 | 10 | > th | dose dependent | sin | 23 | NA |
| 953 | 80.53 | humidity | 60 | 90 | > th | dose independent | rect. | 4 | 15 |
| 966 | 80.55 | humidity | 90 | 90 | < th | dose independent | rect. | 9 | 5 |
| 973 | 80.55 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 23 |