Os09g0279800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0279800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.92 | 0.404 | 9.06 | -0.894 | 1.47 | -0.86 | 0.622 | 1.35 | -0.702 | 0.614 | 20.1 | 661 | 5.38 | 1.12 |
| 80.37 | 0.418 | 9.09 | -1.02 | 1.41 | -0.866 | 0.3 | -- | -0.746 | 0.383 | 20.1 | 654 | 5.48 | 1.19 |
| 75.33 | 0.404 | 9.07 | -0.918 | 1.48 | -0.857 | -- | 1.16 | -0.718 | 0.62 | 20.1 | 659 | 5.38 | 1.12 |
| 79.43 | 0.415 | 9.08 | -1.12 | 1.42 | -0.886 | -- | -- | -0.749 | 0.56 | 20.2 | 650 | 5.38 | 1.3 |
| 93.88 | 0.451 | 9.03 | -0.964 | -- | -2.21 | -- | 0.691 | -0.731 | -- | 20.4 | 563 | 5.19 | 4.57 |
| 113.92 | 0.5 | 9.14 | -1.23 | 2.16 | -- | 0.292 | -- | -0.941 | 0.147 | -- | -- | -- | -- |
| 114.28 | 0.501 | 9.14 | -1.25 | 2.16 | -- | -- | -- | -0.943 | 0.137 | -- | -- | -- | -- |
| 89.48 | 0.441 | 9.05 | -0.908 | -- | -2.2 | -- | -- | -0.741 | -- | 20.61 | 557 | 4.92 | 5.37 |
| 111.36 | 0.491 | 9.05 | -- | 1.42 | -0.915 | -- | -- | -0.684 | 0.642 | 20.4 | 625 | 5.23 | 1.6 |
| 408.67 | 0.945 | 9.09 | -1.18 | -- | -- | -- | -- | -0.911 | -- | -- | -- | -- | -- |
| 155.17 | 0.583 | 9.11 | -- | 2.15 | -- | -- | -- | -0.804 | 0.105 | -- | -- | -- | -- |
| 109.68 | 0.488 | 9.03 | -- | -- | -2.25 | -- | -- | -0.64 | -- | 20.7 | 553 | 4.8 | 5.75 |
| 445.15 | 0.985 | 9.06 | -- | -- | -- | -- | -- | -0.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.15 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 2 | 81.91 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 4 | 82.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 7 | 83.46 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 4 |
| 11 | 84.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 16 | 84.86 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 6 |
| 19 | 85.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 28 | 85.52 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 1 |
| 35 | 85.78 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 39 | 86.24 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 9 |
| 76 | 87.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 108 | 88.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 111 | 88.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 136 | 88.68 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 253 | 90.67 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 329 | 91.52 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 343 | 91.72 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 361 | 91.91 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 411 | 92.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 477 | 92.94 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 10 |
| 500 | 93.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 5 |
| 598 | 94.00 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 7 | 2 |
| 602 | 94.04 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 670 | 94.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 691 | 94.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 692 | 94.66 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 5 | 9 |
| 724 | 94.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 759 | 94.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 761 | 94.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 773 | 95.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 783 | 95.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 806 | 95.12 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 896 | 95.41 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 17 |