Os09g0279600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Topoisomerase 6 subunit B.
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Os09g0279600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Topoisomerase 6 subunit B.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.34 | 0.362 | 8.81 | -1.69 | 0.879 | 0.419 | -0.0749 | -3.01 | -0.0836 | 16.9 | 20.42 | 4530 | -- | -- |
| 65.42 | 0.377 | 8.69 | -0.896 | 0.895 | 0.451 | -0.0158 | -- | 0.132 | 16.9 | 16.17 | 4420 | -- | -- |
| 59.35 | 0.359 | 8.81 | -1.7 | 0.879 | 0.419 | -- | -3.03 | -0.0841 | 16.9 | 20.44 | 4544 | -- | -- |
| 65.21 | 0.376 | 8.69 | -0.908 | 0.89 | 0.484 | -- | -- | 0.128 | 16.9 | 10.38 | 4496 | -- | -- |
| 87.38 | 0.438 | 8.73 | -1.25 | -- | 0.992 | -- | -2.13 | -0.0465 | -- | 20.44 | 4544 | -- | -- |
| 69.37 | 0.39 | 8.67 | -0.684 | 0.877 | -- | -0.0496 | -- | 0.222 | 16.9 | -- | -- | -- | -- |
| 69.38 | 0.39 | 8.67 | -0.685 | 0.877 | -- | -- | -- | 0.222 | 16.9 | -- | -- | -- | -- |
| 90.74 | 0.446 | 8.69 | -0.926 | -- | 1.15 | -- | -- | 0.0459 | -- | 10.73 | 7683 | -- | -- |
| 75.03 | 0.403 | 8.62 | -- | 0.876 | -0.417 | -- | -- | 0.422 | 17 | -5.896 | 47520 | -- | -- |
| 109.86 | 0.49 | 8.66 | -0.717 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 81.73 | 0.423 | 8.65 | -- | 0.889 | -- | -- | -- | 0.298 | 16.9 | -- | -- | -- | -- |
| 109.09 | 0.486 | 8.64 | -- | -- | -0.514 | -- | -- | 0.293 | -- | 34.67 | 47520 | -- | -- |
| 123.42 | 0.519 | 8.64 | -- | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 3 | 57.80 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 4 | 57.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 5 | 57.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 57.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 9 | 57.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 12 | 58.05 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 15 | 58.09 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 16 | 58.09 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 21 | 58.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 22 | 58.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 40 | 58.24 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 41 | 58.25 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 51 | 58.26 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 59 | 58.29 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 77 | 58.37 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 90 | 58.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 93 | 58.40 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 95 | 58.41 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 102 | 58.43 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 104 | 58.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 109 | 58.45 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 117 | 58.47 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 121 | 58.48 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 144 | 58.52 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 155 | 58.54 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 159 | 58.54 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 165 | 58.55 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 176 | 58.57 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 181 | 58.59 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 212 | 58.64 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 216 | 58.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 224 | 58.66 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 228 | 58.67 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 235 | 58.67 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 242 | 58.69 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 246 | 58.69 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 273 | 58.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 286 | 58.73 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 354 | 58.80 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 361 | 58.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 401 | 58.85 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 415 | 58.86 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 433 | 58.88 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 465 | 58.92 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 482 | 58.94 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 509 | 58.96 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 520 | 58.97 | temperature | 20.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 544 | 58.99 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 554 | 59.00 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 572 | 59.01 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 613 | 59.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 624 | 59.06 | temperature | 20.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 627 | 59.06 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 634 | 59.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 648 | 59.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 656 | 59.07 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 659 | 59.07 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 660 | 59.07 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 682 | 59.08 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 697 | 59.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 709 | 59.08 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 712 | 59.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 718 | 59.09 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 730 | 59.09 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 741 | 59.10 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 822 | 59.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 846 | 59.16 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 849 | 59.16 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 860 | 59.16 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 870 | 59.17 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 898 | 59.18 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 917 | 59.18 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 23 | 15 |
| 923 | 59.19 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 963 | 59.21 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 978 | 59.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 993 | 59.22 | radiation | 20.0 | 43200 | > th | dose independent | sin | 7 | NA |