Os09g0278900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os09g0278900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.23 | 0.302 | 9.52 | -1.76 | 0.807 | 0.0886 | 0.256 | -3.83 | 0.115 | 5.51 | 25.96 | 76 | -- | -- |
| 43.71 | 0.31 | 9.47 | -1.38 | 0.815 | -0.701 | 0.658 | -- | 0.187 | 5.47 | 31.7 | 2 | -- | -- |
| 41.37 | 0.3 | 9.52 | -1.75 | 0.796 | 0.08 | -- | -3.93 | 0.117 | 5.55 | 26.12 | 76 | -- | -- |
| 44.72 | 0.314 | 9.47 | -1.37 | 0.817 | -0.756 | -- | -- | 0.183 | 5.61 | 31.7 | 2 | -- | -- |
| 64.14 | 0.373 | 9.5 | -1.53 | -- | -0.669 | -- | -2.31 | 0.214 | -- | 24.4 | 239 | -- | -- |
| 46.22 | 0.319 | 9.47 | -1.4 | 0.853 | -- | 0.785 | -- | 0.201 | 5.34 | -- | -- | -- | -- |
| 47.69 | 0.323 | 9.47 | -1.4 | 0.86 | -- | -- | -- | 0.197 | 5.48 | -- | -- | -- | -- |
| 65.99 | 0.378 | 9.46 | -1.24 | -- | -0.839 | -- | -- | 0.296 | -- | 24.4 | 272 | -- | -- |
| 93.84 | 0.454 | 9.44 | -- | 0.763 | -0.832 | -- | -- | 0.32 | 5.78 | 30.1 | 3 | -- | -- |
| 86.17 | 0.434 | 9.48 | -1.37 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 99.28 | 0.466 | 9.43 | -- | 0.837 | -- | -- | -- | 0.353 | 5.55 | -- | -- | -- | -- |
| 105.26 | 0.478 | 9.43 | -- | -- | -1.02 | -- | -- | 0.453 | -- | 24.2 | 274 | -- | -- |
| 135.72 | 0.544 | 9.45 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 17 | 39.45 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 22 | 39.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 40 | 39.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 49 | 39.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 67 | 39.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 74 | 39.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 79 | 39.85 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 131 | 40.10 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 9 |
| 133 | 40.11 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 160 | 40.24 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 17 |
| 162 | 40.25 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 169 | 40.28 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 11 |
| 213 | 40.43 | temperature | 30 | 90 | > th | dose independent | rect. | 9 | 7 |
| 214 | 40.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 225 | 40.45 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 277 | 40.54 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 17 |
| 297 | 40.57 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 320 | 40.61 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 9 |
| 347 | 40.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 348 | 40.67 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 376 | 40.73 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 385 | 40.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 388 | 40.77 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 2 |
| 399 | 40.79 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 14 |
| 426 | 40.84 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 10 |
| 429 | 40.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 450 | 40.88 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 11 |
| 470 | 40.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 9 |
| 488 | 40.93 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 11 |
| 538 | 40.97 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 549 | 40.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 7 |
| 550 | 40.99 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 578 | 41.02 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 19 |
| 582 | 41.03 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 10 |
| 609 | 41.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 623 | 41.06 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 626 | 41.06 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 10 |
| 657 | 41.10 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 8 |
| 671 | 41.12 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 673 | 41.12 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 674 | 41.12 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 703 | 41.12 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 22 |
| 718 | 41.13 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 738 | 41.15 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 751 | 41.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 765 | 41.16 | temperature | 10 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 769 | 41.17 | humidity | 60 | 10 | > th | dose independent | rect. | 5 | 18 |
| 781 | 41.18 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 20 |
| 799 | 41.19 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 814 | 41.20 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 818 | 41.20 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 829 | 41.21 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 830 | 41.21 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 840 | 41.22 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 6 |
| 842 | 41.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 843 | 41.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 850 | 41.23 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 851 | 41.23 | humidity | 80 | 10 | > th | dose independent | rect. | 22 | 7 |
| 860 | 41.24 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 876 | 41.25 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 877 | 41.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 878 | 41.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 922 | 41.28 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 926 | 41.28 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 927 | 41.28 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 929 | 41.28 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 14 |
| 938 | 41.28 | radiation | 1 | 10 | < th | dose dependent | sin | 8 | NA |
| 978 | 41.29 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 990 | 41.30 | humidity | 50 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 999 | 41.31 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 16 | NA |