Os09g0276600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0276600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.21 | 0.489 | 8.78 | 0.582 | 1.92 | 1.48 | -1.26 | 0.21 | 0.125 | 20.9 | 21.3 | 1004 | -- | -- |
| 106.66 | 0.481 | 8.78 | 0.59 | 1.89 | 1.35 | -1.28 | -- | 0.0968 | 20.9 | 22 | 945 | -- | -- |
| 113.1 | 0.495 | 8.79 | 0.522 | 1.94 | 1.47 | -- | -0.145 | 0.102 | 20.8 | 21.33 | 1004 | -- | -- |
| 111.95 | 0.493 | 8.78 | 0.66 | 1.89 | 1.36 | -- | -- | 0.0952 | 20.9 | 22 | 951 | -- | -- |
| 298.6 | 0.805 | 8.78 | 0.512 | -- | 1.78 | -- | -0.256 | -0.0524 | -- | 21.9 | 780 | -- | -- |
| 176.57 | 0.623 | 8.69 | 1.09 | 2.09 | -- | -1.29 | -- | 0.519 | 21.2 | -- | -- | -- | -- |
| 182.37 | 0.632 | 8.69 | 1.14 | 2.1 | -- | -- | -- | 0.521 | 21.1 | -- | -- | -- | -- |
| 298.64 | 0.805 | 8.76 | 0.503 | -- | 1.81 | -- | -- | -0.0539 | -- | 21.8 | 781 | -- | -- |
| 121.17 | 0.513 | 8.79 | -- | 1.9 | 1.53 | -- | -- | -0.00419 | 20.8 | 21.7 | 991 | -- | -- |
| 436.73 | 0.977 | 8.64 | 1.15 | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
| 216.71 | 0.689 | 8.72 | -- | 2.1 | -- | -- | -- | 0.394 | 21.1 | -- | -- | -- | -- |
| 304.75 | 0.813 | 8.78 | -- | -- | 1.92 | -- | -- | -0.139 | -- | 21.8 | 796 | -- | -- |
| 471.37 | 1.01 | 8.67 | -- | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.05 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 2 | 99.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 3 | 99.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 20 | 101.87 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 22 | 101.94 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 25 | 102.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 27 | 102.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 39 | 102.62 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 57 | 103.29 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 69 | 103.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 93 | 104.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 191 | 106.21 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 195 | 106.25 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 200 | 106.35 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 205 | 106.40 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 209 | 106.44 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 249 | 107.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 285 | 107.88 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 11 |
| 304 | 108.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 326 | 108.58 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 346 | 108.76 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 349 | 108.80 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 13 |
| 387 | 109.24 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 430 | 109.77 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 450 | 109.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 454 | 110.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 642 | 112.05 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 670 | 112.27 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 684 | 112.46 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 20 |
| 756 | 113.24 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 804 | 113.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 839 | 113.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |