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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0275300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.022) R2 : 0.000114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0106 (0.0462) R2dN8 : 0.000148 R2N8 : 0.000114
σ : 0.414
deviance : 78.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.51 0.403 3.28 0.203 0.11 0.539 0.0511 0.896 0.066 5.94 1015 8717 -- --
74.49 0.402 3.25 0.287 0.11 0.298 0.0711 -- 0.0931 5.54 1014 7671 -- --
73.52 0.399 3.28 0.204 0.11 0.541 -- 0.898 0.0657 5.98 1015 8720 -- --
74.48 0.402 3.25 0.288 0.111 0.297 -- -- 0.0895 6.05 1014 7674 -- --
74.15 0.401 3.28 0.208 -- 0.532 -- 0.873 0.0666 -- 1015 8704 -- --
77.34 0.412 3.27 0.149 0.108 -- 0.0412 -- 0.0251 5.97 -- -- -- --
77.34 0.412 3.27 0.149 0.108 -- -- -- 0.025 6.01 -- -- -- --
75.1 0.404 3.25 0.292 -- 0.298 -- -- 0.0939 -- 1014 7680 -- --
76.29 0.407 3.26 -- 0.114 0.195 -- -- 0.0495 5.88 1013 10344 -- --
77.94 0.413 3.27 0.152 -- -- -- -- 0.0274 -- -- -- -- --
77.92 0.413 3.27 -- 0.11 -- -- -- 0.0084 5.94 -- -- -- --
76.95 0.409 3.26 -- -- 0.195 -- -- 0.0498 -- 1013 10348 -- --
78.55 0.414 3.27 -- -- -- -- -- 0.0106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.15 radiation 10.0 43200 < th dose dependent rect. 23 1
4 69.78 atmosphere 1000.0 30 > th dose independent rect. 23 23
8 70.42 radiation 10.0 4320 < th dose dependent rect. 23 1
16 70.53 wind 3.0 30 < th dose independent rect. 22 1
17 70.54 wind 9.0 1440 < th dose independent rect. 23 1
18 70.54 temperature 25.0 10 > th dose independent rect. 22 1
20 70.54 temperature 10.0 1440 > th dose independent rect. 23 1
23 70.54 temperature 30.0 1440 < th dose independent rect. 23 1
27 70.54 humidity 80.0 30 > th dose independent rect. 22 1
28 70.54 humidity 50.0 1440 > th dose independent rect. 23 1
38 70.54 atmosphere 995.0 1440 > th dose independent rect. 23 1
39 70.54 radiation 1.0 1440 < th dose independent rect. 23 1
59 70.54 temperature 10.0 1440 > th dose independent rect. 24 23
67 70.55 temperature 20.0 30 > th dose dependent rect. 22 1
69 70.56 wind 5.0 30 < th dose dependent rect. 22 1
78 70.60 atmosphere 1005.0 30 > th dose dependent rect. 22 1
80 70.61 humidity 70.0 30 > th dose dependent rect. 22 1
85 70.62 humidity 50.0 30 > th dose dependent rect. 22 1
91 70.64 temperature 10.0 30 > th dose independent rect. 22 1
93 70.64 temperature 30.0 30 < th dose independent rect. 22 1
94 70.64 humidity 50.0 30 > th dose independent rect. 22 1
97 70.64 atmosphere 995.0 30 > th dose independent rect. 22 1
99 70.64 atmosphere 1010.0 30 < th dose independent rect. 22 1
101 70.64 radiation 1.0 30 < th dose independent rect. 22 1
106 70.64 precipitation 0.1 30 < th dose independent rect. 22 1
107 70.64 temperature 10.0 30 > th dose independent rect. 23 23
108 70.64 radiation 1.0 30 < th dose dependent rect. 22 1
113 70.64 precipitation 0.1 30 < th dose dependent rect. 22 1
114 70.65 humidity 90.0 30 < th dose independent rect. 22 1
117 70.66 wind 1.0 30 > th dose independent rect. 22 1
119 70.70 atmosphere 1015.0 30 < th dose dependent rect. 22 1
125 70.82 humidity 90.0 30 < th dose dependent rect. 22 1
127 70.84 temperature 30.0 30 < th dose dependent rect. 22 1
128 70.85 wind 1.0 30 > th dose dependent rect. 22 1
131 70.90 precipitation 0.1 4320 < th dose independent rect. 23 1
133 70.90 precipitation 0.1 4320 < th dose dependent rect. 23 1
168 71.03 precipitation 0.1 30 < th dose independent rect. 23 23
169 71.03 precipitation 0.1 30 < th dose dependent rect. 23 23
176 71.12 temperature 10.0 720 > th dose independent rect. 3 8
177 71.12 atmosphere 995.0 720 > th dose independent rect. 3 8
178 71.12 temperature 10.0 720 > th dose independent rect. 11 16
179 71.16 precipitation 0.1 720 < th dose independent rect. 15 8
180 71.16 atmosphere 995.0 720 > th dose independent rect. 23 16
181 71.16 precipitation 0.1 720 < th dose dependent rect. 15 8
182 71.21 temperature 10.0 720 > th dose independent rect. 15 8
183 71.21 temperature 10.0 720 > th dose independent rect. 23 16
184 71.24 wind 9.0 30 < th dose independent rect. 23 23
188 71.26 humidity 50.0 720 > th dose independent rect. 3 8
192 71.39 wind 9.0 720 < th dose independent rect. 3 8
203 71.72 temperature 30.0 720 < th dose independent rect. 15 8
204 71.75 precipitation 0.1 720 < th dose independent rect. 11 16
205 71.75 precipitation 0.1 720 < th dose dependent rect. 11 16
206 71.78 atmosphere 995.0 720 > th dose independent rect. 11 16
208 71.89 atmosphere 995.0 720 > th dose independent rect. 15 8
210 71.94 atmosphere 1015.0 720 < th dose independent rect. 3 8
212 71.99 humidity 80.0 14400 < th dose dependent rect. 4 5
215 72.04 humidity 70.0 14400 > th dose independent rect. 8 1
221 72.12 humidity 50.0 30 > th dose independent rect. 23 23
222 72.14 humidity 70.0 14400 < th dose independent rect. 8 1
227 72.23 radiation 40.0 720 < th dose independent rect. 15 8
228 72.24 humidity 70.0 14400 > th dose independent rect. 4 5
229 72.24 humidity 70.0 14400 > th dose independent rect. 1 8
230 72.24 wind 1.0 14400 < th dose dependent rect. 6 1
245 72.39 humidity 70.0 14400 < th dose independent rect. 6 3
260 72.50 precipitation 0.1 720 < th dose independent rect. 3 8
261 72.50 precipitation 0.1 720 < th dose dependent rect. 3 8
267 72.76 humidity 50.0 14400 > th dose independent rect. 14 2
268 72.77 precipitation 0.1 720 < th dose independent rect. 23 16
269 72.77 humidity 60.0 14400 < th dose dependent rect. 12 1
270 72.77 precipitation 0.1 720 < th dose dependent rect. 23 16
271 72.78 humidity 50.0 720 > th dose independent rect. 23 16
273 72.81 wind 1.0 14400 < th dose independent rect. 6 1
274 72.83 wind 9.0 720 < th dose independent rect. 15 8
280 73.00 wind 1.0 720 > th dose independent rect. 15 8
283 73.03 temperature 30.0 1440 < th dose independent rect. 14 21
285 73.07 temperature 30.0 1440 > th dose independent rect. 14 21
287 73.10 humidity 50.0 14400 > th dose independent rect. 13 7
291 73.10 humidity 50.0 14400 > th dose independent rect. 13 17
309 73.14 temperature 30.0 1440 < th dose independent rect. 14 10
333 73.16 temperature 30.0 1440 < th dose independent rect. 14 15
343 73.17 wind 5.0 14400 < th dose independent rect. 11 1
348 73.18 temperature 30.0 1440 < th dose independent rect. 14 5
363 73.20 temperature 30.0 1440 > th dose independent rect. 14 5
389 73.24 temperature 30.0 1440 > th dose independent rect. 15 1
404 73.25 wind 1.0 14400 > th dose independent rect. 6 1
422 73.26 humidity 50.0 14400 > th dose independent sin 18 NA
424 73.26 wind 1.0 4320 < th dose independent rect. 21 1
453 73.29 humidity 60.0 14400 < th dose independent rect. 10 2
511 73.33 humidity 60.0 14400 < th dose dependent sin 5 NA
515 73.34 humidity 50.0 14400 > th dose independent no NA NA
519 73.34 humidity 50.0 14400 > th dose independent rect. 7 10
531 73.34 humidity 50.0 14400 > th dose independent rect. 7 14
563 73.34 humidity 50.0 14400 > th dose independent rect. 22 19
588 73.34 humidity 50.0 14400 > th dose independent rect. 7 23
592 73.34 humidity 50.0 14400 > th dose independent rect. 22 23
596 73.35 wind 7.0 14400 < th dose independent rect. 9 1
658 73.35 wind 1.0 4320 < th dose dependent rect. 21 1
659 73.36 temperature 30.0 1440 < th dose independent rect. 15 1
668 73.38 humidity 50.0 4320 < th dose independent rect. 15 2
671 73.39 humidity 50.0 720 > th dose independent rect. 11 2
678 73.40 wind 1.0 14400 < th dose dependent rect. 4 7
734 73.46 wind 1.0 4320 > th dose independent rect. 21 1
788 73.52 wind 5.0 14400 > th dose independent rect. 11 1
816 73.55 temperature 30.0 1440 < th dose independent sin 14 NA
818 73.55 wind 1.0 14400 < th dose independent rect. 4 4
821 73.55 temperature 30.0 10 < th dose independent rect. 23 23
830 73.57 wind 1.0 14400 > th dose independent rect. 4 4
831 73.57 humidity 50.0 14400 < th dose independent rect. 13 4
835 73.57 humidity 50.0 720 > th dose independent rect. 1 22
876 73.61 wind 1.0 14400 < th dose independent rect. 4 7
944 73.65 temperature 30.0 1440 > th dose independent sin 13 NA
988 73.66 temperature 30.0 720 < th dose independent rect. 1 22
989 73.66 humidity 50.0 14400 < th dose dependent sin 13 NA