Os09g0274100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0274100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.72 | 0.605 | 6.42 | 0.401 | 2.72 | -2.44 | 0.794 | -4.55 | 0.343 | 19.3 | 31.64 | 306 | 4.93 | 16.4 |
| 197.23 | 0.654 | 6.44 | 0.17 | 2.79 | -2.22 | 0.495 | -- | 0.409 | 18.9 | 36.24 | 346 | 4.23 | 16.5 |
| 166.79 | 0.601 | 6.43 | 0.458 | 2.73 | -2.38 | -- | -4.32 | 0.36 | 19.3 | 31.99 | 316 | 4.75 | 16.5 |
| 192.48 | 0.646 | 6.47 | -0.00996 | 2.92 | -2.73 | -- | -- | 0.297 | 18.5 | 39.12 | 384 | 3.62 | 17.1 |
| 226.06 | 0.7 | 6.37 | -0.197 | -- | -3.56 | -- | -2.33 | 0.425 | -- | 38.33 | 349 | 1.27 | 9.25 |
| 266.11 | 0.765 | 6.44 | 0.235 | 2.71 | -- | 1.28 | -- | 0.475 | 20.1 | -- | -- | -- | -- |
| 270.95 | 0.771 | 6.44 | 0.2 | 2.72 | -- | -- | -- | 0.477 | 20.1 | -- | -- | -- | -- |
| 236.86 | 0.717 | 6.38 | -0.051 | -- | -3.57 | -- | -- | 0.33 | -- | 37.54 | 362 | 1.05 | 9.1 |
| 192.15 | 0.646 | 6.47 | -- | 2.99 | -2.72 | -- | -- | 0.283 | 18.5 | 39.71 | 386 | 3.58 | 17.3 |
| 675.99 | 1.21 | 6.37 | 0.176 | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
| 272.01 | 0.771 | 6.44 | -- | 2.72 | -- | -- | -- | 0.454 | 20.1 | -- | -- | -- | -- |
| 232.2 | 0.71 | 6.4 | -- | -- | -3.62 | -- | -- | 0.296 | -- | 36.55 | 397 | 0.189 | 9.82 |
| 676.81 | 1.21 | 6.37 | -- | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 3 | 173.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 44 | 182.22 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 79 | 185.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 81 | 185.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 83 | 185.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 91 | 185.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 118 | 186.85 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 16 |
| 133 | 187.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 146 | 187.69 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 170 | 188.78 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 171 | 188.93 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 268 | 191.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 368 | 193.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 414 | 193.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 425 | 194.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 502 | 194.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 554 | 195.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 559 | 195.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 604 | 195.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 717 | 196.12 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |