Os09g0272600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0272600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 571.12 | 1.12 | 5.24 | -0.831 | 1.46 | 3.02 | -0.366 | -3.13 | -0.0656 | 4.47 | 5.701 | 2476 | -- | -- |
| 572.76 | 1.11 | 5.29 | -0.721 | 1.47 | 3.65 | -0.365 | -- | -0.0893 | 4.5 | 5.697 | 2475 | -- | -- |
| 571.23 | 1.11 | 5.25 | -0.822 | 1.46 | 3.06 | -- | -3.07 | -0.0702 | 4.39 | 5.499 | 2492 | -- | -- |
| 573.2 | 1.12 | 5.29 | -0.725 | 1.45 | 3.64 | -- | -- | -0.084 | 4.43 | 5.696 | 2475 | -- | -- |
| 681.33 | 1.22 | 5.26 | -0.724 | -- | 3.4 | -- | -3.17 | -0.0688 | -- | 4.637 | 2526 | -- | -- |
| 753.98 | 1.29 | 5.37 | -1.71 | 1.57 | -- | -0.655 | -- | -0.446 | 3.99 | -- | -- | -- | -- |
| 755.16 | 1.29 | 5.37 | -1.7 | 1.56 | -- | -- | -- | -0.442 | 3.91 | -- | -- | -- | -- |
| 684.71 | 1.22 | 5.31 | -0.616 | -- | 3.94 | -- | -- | -0.0911 | -- | 5 | 2496 | -- | -- |
| 585.33 | 1.13 | 5.26 | -- | 1.43 | 3.98 | -- | -- | 0.0151 | 4.49 | 5.653 | 2475 | -- | -- |
| 888.86 | 1.39 | 5.38 | -1.64 | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
| 831.73 | 1.35 | 5.33 | -- | 1.53 | -- | -- | -- | -0.253 | 3.93 | -- | -- | -- | -- |
| 693.68 | 1.23 | 5.29 | -- | -- | 4.22 | -- | -- | -0.00901 | -- | 5.009 | 2492 | -- | -- |
| 959.82 | 1.45 | 5.34 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 561.91 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 2 | 562.29 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 3 | 563.03 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 6 | 564.00 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 9 | 565.11 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 11 | 565.56 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 26 | 567.92 | wind | 9 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 29 | 567.95 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 50 | 568.69 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 56 | 569.43 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 58 | 569.57 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 64 | 570.17 | wind | 7 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 91 | 571.43 | wind | 7 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 127 | 573.53 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 232 | 579.80 | wind | 7 | 4320 | > th | dose independent | sin | 13 | NA |
| 246 | 580.94 | wind | 7 | 4320 | < th | dose independent | sin | 13 | NA |
| 277 | 584.75 | wind | 5 | 4320 | > th | dose dependent | sin | 13 | NA |
| 283 | 585.54 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 445 | 594.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 536 | 601.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 537 | 601.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 554 | 602.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 556 | 602.66 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 565 | 603.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 618 | 605.31 | temperature | 20 | 14400 | < th | dose dependent | sin | 22 | NA |
| 667 | 606.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 712 | 607.89 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 713 | 607.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 740 | 608.46 | temperature | 20 | 14400 | < th | dose dependent | rect. | 8 | 17 |
| 796 | 609.51 | temperature | 15 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 836 | 610.00 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 854 | 610.29 | temperature | 15 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 917 | 611.23 | temperature | 15 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 934 | 611.46 | temperature | 15 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 938 | 611.55 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 985 | 612.07 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 1 |