Os09g0272300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-glucanase.
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Os09g0272300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-glucanase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.08 | 0.602 | 3.66 | -1.15 | 0.112 | 2.94 | 0.632 | -3.65 | 0.0919 | 23.2 | 23.17 | 59 | -- | -- |
| 169.79 | 0.607 | 3.6 | -0.596 | 0.0361 | 2.71 | 1.13 | -- | 0.236 | 23.4 | 22.56 | 114 | -- | -- |
| 164.96 | 0.598 | 3.67 | -1.23 | 0.17 | 2.87 | -- | -3.98 | 0.0672 | 19.9 | 22.94 | 56 | -- | -- |
| 174.36 | 0.615 | 3.6 | -0.625 | 0.0504 | 2.6 | -- | -- | 0.261 | 11.3 | 22.64 | 122 | -- | -- |
| 164.44 | 0.597 | 3.67 | -1.28 | -- | 2.88 | -- | -4.01 | 0.0812 | -- | 22.89 | 118 | -- | -- |
| 278.07 | 0.782 | 3.51 | -0.092 | 1.15 | -- | -0.518 | -- | 0.65 | 15.6 | -- | -- | -- | -- |
| 278.87 | 0.782 | 3.52 | -0.1 | 1.14 | -- | -- | -- | 0.647 | 15.7 | -- | -- | -- | -- |
| 174.51 | 0.615 | 3.6 | -0.64 | -- | 2.61 | -- | -- | 0.248 | -- | 22.6 | 120 | -- | -- |
| 183.25 | 0.63 | 3.57 | -- | 0.198 | 2.3 | -- | -- | 0.362 | 14.8 | 22.76 | 132 | -- | -- |
| 351.43 | 0.876 | 3.51 | -0.148 | -- | -- | -- | -- | 0.616 | -- | -- | -- | -- | -- |
| 279.13 | 0.782 | 3.51 | -- | 1.15 | -- | -- | -- | 0.658 | 15.7 | -- | -- | -- | -- |
| 184.72 | 0.633 | 3.57 | -- | -- | 2.49 | -- | -- | 0.347 | -- | 22.9 | 118 | -- | -- |
| 352.01 | 0.876 | 3.51 | -- | -- | -- | -- | -- | 0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 171.12 | temperature | 20 | 30 | > th | dose dependent | sin | 21 | NA |
| 5 | 171.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 22 |
| 9 | 171.99 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 17 |
| 13 | 172.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 18 | 172.10 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 60 | 172.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 68 | 173.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 186 | 175.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 200 | 175.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 228 | 175.96 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 351 | 178.99 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 376 | 179.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 483 | 181.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 550 | 182.23 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 673 | 184.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 706 | 184.68 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 903 | 187.28 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 946 | 187.76 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 952 | 187.83 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 953 | 187.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 14 |