Os09g0272200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0272200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.38 | 0.701 | 7.75 | 1.05 | 3.6 | -2.59 | -1.52 | -0.94 | -0.183 | 5.4 | 20.06 | 275 | 11.1 | 13.2 |
| 224.49 | 0.698 | 7.74 | 1.07 | 3.69 | -2.53 | -0.749 | -- | -0.169 | 5.35 | 19.83 | 260 | 11.3 | 13.2 |
| 226.08 | 0.7 | 7.74 | 1.08 | 3.64 | -2.61 | -- | -0.257 | -0.188 | 5.29 | 19.87 | 275 | 11.3 | 13.2 |
| 225.55 | 0.699 | 7.73 | 1.11 | 3.7 | -2.53 | -- | -- | -0.132 | 5.34 | 19.81 | 254 | 11.4 | 13.2 |
| 430.81 | 0.967 | 7.8 | 0.776 | -- | -4.27 | -- | 0.286 | -0.52 | -- | 19.1 | 215 | 10.9 | 12.2 |
| 319.71 | 0.838 | 7.7 | 0.619 | 6.19 | -- | 0.155 | -- | -0.376 | 6.47 | -- | -- | -- | -- |
| 319.77 | 0.837 | 7.7 | 0.621 | 6.19 | -- | -- | -- | -0.377 | 6.47 | -- | -- | -- | -- |
| 378.95 | 0.907 | 7.74 | 1.44 | -- | -4.62 | -- | -- | 0.0512 | -- | 19.23 | 241 | 10.9 | 12 |
| 254.8 | 0.743 | 7.75 | -- | 4 | -2.2 | -- | -- | -0.253 | 5.49 | 19.86 | 239 | 11.7 | 13.1 |
| 2314.79 | 2.25 | 7.82 | 0.778 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 329.94 | 0.85 | 7.72 | -- | 6.2 | -- | -- | -- | -0.446 | 6.46 | -- | -- | -- | -- |
| 393.78 | 0.924 | 8 | -- | -- | -5.5 | -- | -- | -0.945 | -- | 9.522 | 550 | 7.34 | 12.5 |
| 2330.73 | 2.25 | 7.84 | -- | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.36 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 13 |
| 5 | 235.23 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 12 |
| 8 | 238.24 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 12 | 239.64 | temperature | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 13 | 239.70 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 2 |
| 19 | 240.45 | temperature | 20 | 270 | > th | dose independent | sin | 15 | NA |
| 20 | 240.69 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 47 | 242.32 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 11 |
| 93 | 244.34 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 12 |
| 98 | 244.44 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 6 |
| 150 | 245.98 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 173 | 247.01 | temperature | 20 | 10 | > th | dose independent | sin | 12 | NA |
| 184 | 247.49 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 185 | 247.49 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 13 |
| 196 | 248.04 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 11 |
| 231 | 248.96 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 7 |
| 270 | 250.03 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 19 |
| 398 | 253.32 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 20 |
| 422 | 253.98 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 466 | 255.33 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 477 | 255.66 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 20 |
| 505 | 256.24 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 20 |
| 512 | 256.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 524 | 256.64 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 549 | 256.96 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 557 | 257.18 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 607 | 258.22 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 769 | 261.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 849 | 262.48 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 892 | 262.99 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 22 |
| 903 | 263.09 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 918 | 263.32 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 923 | 263.38 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 928 | 263.46 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 952 | 263.76 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 12 |
| 958 | 263.85 | temperature | 20 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 966 | 263.93 | temperature | 20 | 270 | < th | dose dependent | sin | 17 | NA |
| 979 | 264.15 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 995 | 264.36 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |