Os09g0272000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heavy metal transport/detoxification protein domain containing protein.
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Os09g0272000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heavy metal transport/detoxification protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.73 | 0.696 | 11.6 | -0.13 | 4.91 | -4.21 | 1.89 | 0.0543 | 0.246 | 9.32 | 0.9398 | 1219 | 16.6 | -- |
| 215.12 | 0.683 | 11.6 | -0.0932 | 5.12 | -4.3 | 1.8 | -- | 0.259 | 9.1 | 0.83 | 1191 | 15.6 | -- |
| 229.4 | 0.705 | 11.6 | 0.0323 | 4.93 | -3.92 | -- | 0.619 | 0.247 | 9.18 | 0.86 | 1198 | 15.9 | -- |
| 228.53 | 0.704 | 11.6 | -0.0393 | 5.09 | -4.27 | -- | -- | 0.243 | 9.12 | 0.8379 | 1192 | 15.7 | -- |
| 367.42 | 0.893 | 11.6 | 0.629 | -- | -4.46 | -- | -1.22 | 0.677 | -- | 113.4 | 925 | 16 | -- |
| 367.33 | 0.899 | 11.5 | 0.579 | 4.5 | -- | 1.29 | -- | 0.668 | 9.69 | -- | -- | -- | -- |
| 373.65 | 0.905 | 11.5 | 0.628 | 4.49 | -- | -- | -- | 0.67 | 9.7 | -- | -- | -- | -- |
| 364.6 | 0.889 | 11.6 | 0.548 | -- | -5.04 | -- | -- | 0.613 | -- | 54.49 | 858 | 15.6 | -- |
| 228.47 | 0.704 | 11.6 | -- | 5.1 | -4.23 | -- | -- | 0.248 | 9.12 | 0.84 | 1192 | 15.6 | -- |
| 1570.8 | 1.85 | 11.6 | 0.588 | -- | -- | -- | -- | 0.676 | -- | -- | -- | -- | -- |
| 384.06 | 0.917 | 11.5 | -- | 4.49 | -- | -- | -- | 0.6 | 9.69 | -- | -- | -- | -- |
| 374.62 | 0.901 | 11.6 | -- | -- | -4.95 | -- | -- | 0.605 | -- | 54.18 | 849 | 15.6 | -- |
| 1579.92 | 1.86 | 11.7 | -- | -- | -- | -- | -- | 0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 243.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 3 | 243.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 10 | 246.86 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 12 | 246.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 14 | 247.07 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 17 | 247.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 23 | 247.94 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 26 | 248.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 28 | 248.18 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 29 | 248.20 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 35 | 248.73 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 36 | 248.74 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 57 | 249.48 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 63 | 249.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 74 | 249.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 123 | 250.84 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 127 | 250.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 148 | 251.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 159 | 251.36 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 163 | 251.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 165 | 251.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 168 | 251.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 213 | 252.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 232 | 252.28 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 12 |
| 234 | 252.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 237 | 252.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 243 | 252.36 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 275 | 252.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 307 | 252.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 311 | 252.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 314 | 252.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 328 | 253.11 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 8 |
| 342 | 253.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 343 | 253.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 348 | 253.27 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 352 | 253.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 372 | 253.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 390 | 253.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 425 | 253.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 440 | 253.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 480 | 254.16 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 587 | 254.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 594 | 254.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 624 | 254.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 649 | 255.31 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 650 | 255.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 694 | 255.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 714 | 255.84 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 8 |
| 724 | 255.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 734 | 256.10 | humidity | 80 | 720 | < th | dose independent | sin | 19 | NA |
| 829 | 256.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 853 | 257.19 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 921 | 257.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 994 | 258.76 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |