Os09g0270700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os09g0270700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 331.33 | 0.855 | 3.23 | 0.295 | 0.296 | 5.1 | -0.433 | 18.5 | 0.0384 | 11.1 | 3.023 | 28 | 3.98 | 3.04 |
| 350.68 | 0.872 | 3.25 | 0.246 | 0.344 | 3.94 | 0.129 | -- | 0.0331 | 10.3 | 3.292 | 9 | 4 | 3.22 |
| 332.02 | 0.849 | 3.24 | 0.287 | 0.296 | 5.12 | -- | 18.5 | 0.0349 | 11.1 | 3.1 | 27 | 3.93 | 2.99 |
| 349.25 | 0.87 | 3.23 | 0.217 | 0.303 | 3.39 | -- | -- | 0.055 | 10.8 | 3.101 | 9 | 3.98 | 3.25 |
| 337.37 | 0.855 | 3.25 | 0.284 | -- | 5.05 | -- | 18 | 0.0338 | -- | 3.009 | 25 | 3.86 | 3.06 |
| 368.82 | 0.9 | 3.22 | 0.241 | 0.338 | -- | -0.355 | -- | 0.0472 | 10.1 | -- | -- | -- | -- |
| 369.3 | 0.9 | 3.22 | 0.227 | 0.342 | -- | -- | -- | 0.0458 | 9.88 | -- | -- | -- | -- |
| 355.3 | 0.878 | 3.23 | 0.22 | -- | 3.43 | -- | -- | 0.0691 | -- | 3.1 | 9 | 3.98 | 3.47 |
| 350.69 | 0.872 | 3.23 | -- | 0.313 | 3.38 | -- | -- | 0.0454 | 10.7 | 3.16 | 9 | 4 | 3.13 |
| 376.31 | 0.906 | 3.23 | 0.223 | -- | -- | -- | -- | 0.0459 | -- | -- | -- | -- | -- |
| 370.65 | 0.901 | 3.23 | -- | 0.342 | -- | -- | -- | 0.0206 | 9.83 | -- | -- | -- | -- |
| 356.17 | 0.879 | 3.23 | -- | -- | 3.36 | -- | -- | 0.0455 | -- | 3.121 | 7 | 3.98 | 3.31 |
| 377.62 | 0.907 | 3.24 | -- | -- | -- | -- | -- | 0.0212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.53 | wind | 3 | 30 | > th | dose independent | rect. | 4 | 3 |
| 3 | 332.23 | humidity | 90 | 90 | < th | dose independent | rect. | 4 | 2 |
| 4 | 332.23 | wind | 3 | 30 | > th | dose dependent | rect. | 4 | 3 |
| 11 | 333.35 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 17 | 333.65 | wind | 3 | 10 | > th | dose independent | rect. | 2 | 4 |
| 24 | 334.17 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 52 | 339.90 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 55 | 340.63 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 60 | 341.23 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 61 | 341.28 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 72 | 342.25 | wind | 5 | 90 | > th | dose dependent | rect. | 12 | 2 |
| 73 | 342.28 | wind | 7 | 10 | > th | dose independent | rect. | 13 | 1 |
| 80 | 342.64 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 6 |
| 82 | 342.66 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 85 | 342.77 | temperature | 20 | 10 | < th | dose dependent | rect. | 4 | 9 |
| 98 | 343.22 | radiation | 10 | 30 | < th | dose independent | rect. | 10 | 4 |
| 105 | 343.39 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 2 |
| 124 | 343.86 | wind | 3 | 270 | > th | dose independent | rect. | 1 | 5 |
| 133 | 344.50 | wind | 7 | 90 | > th | dose independent | rect. | 12 | 1 |
| 148 | 344.59 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 160 | 344.60 | temperature | 20 | 10 | < th | dose dependent | sin | 23 | NA |
| 181 | 345.07 | wind | 3 | 270 | > th | dose independent | rect. | 1 | 3 |
| 183 | 345.08 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 191 | 345.21 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 197 | 345.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 199 | 345.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 208 | 345.46 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 227 | 345.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 243 | 346.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 268 | 346.43 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 19 |
| 294 | 346.81 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 4 |
| 311 | 347.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 316 | 347.17 | wind | 1 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 323 | 347.43 | temperature | 25 | 10 | < th | dose dependent | sin | 1 | NA |
| 328 | 347.60 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 2 |
| 331 | 347.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 350 | 347.97 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 22 |
| 370 | 348.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 377 | 348.33 | temperature | 20 | 90 | < th | dose independent | rect. | 4 | 1 |
| 408 | 348.59 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 3 |
| 434 | 348.91 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 445 | 349.01 | humidity | 90 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 450 | 349.08 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 17 |
| 481 | 349.25 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 1 |
| 537 | 349.73 | humidity | 80 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 559 | 349.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 564 | 349.91 | temperature | 20 | 30 | < th | dose independent | rect. | 24 | 23 |
| 594 | 350.16 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 613 | 350.25 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 15 |
| 637 | 350.36 | humidity | 90 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 639 | 350.36 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 11 |
| 641 | 350.36 | radiation | 10 | 10 | < th | dose independent | rect. | 20 | 19 |
| 711 | 350.64 | temperature | 20 | 30 | < th | dose independent | rect. | 24 | 7 |
| 741 | 350.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 743 | 350.80 | wind | 3 | 270 | > th | dose independent | rect. | 24 | 13 |
| 782 | 351.02 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 794 | 351.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 22 |
| 833 | 351.38 | temperature | 20 | 30 | > th | dose independent | sin | 3 | NA |
| 864 | 351.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 5 |
| 887 | 351.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 891 | 351.63 | temperature | 20 | 30 | < th | dose independent | sin | 4 | NA |
| 946 | 351.86 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 10 |
| 967 | 351.97 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 971 | 352.01 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 981 | 352.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 992 | 352.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |