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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0269500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0296) R2 : 0.273
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.945 (0.0742) R2dC : 0.26 R2C : 0.252
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.0621) R2dN8 : 0.0213 R2N8 : 0.0134
σ : 0.557
deviance : 141.6
__
_____
C
peak time of C : 20.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.35 0.518 3.31 0.431 0.953 -0.322 1.38 -1.62 0.297 20.7 69 7374 -- --
124.17 0.519 3.31 0.504 0.942 -0.489 1.47 -- 0.382 20.6 76 6013 -- --
127.6 0.526 3.31 0.392 0.949 -0.321 -- -1.53 0.296 20.6 69.36 7348 -- --
129.53 0.53 3.3 0.515 1.03 -0.516 -- -- 0.439 20.5 75 6450 -- --
177.16 0.623 3.31 0.55 -- -0.274 -- -0.313 0.242 -- 69.04 7268 -- --
128.12 0.531 3.33 0.582 0.949 -- 1.33 -- 0.26 20.7 -- -- -- --
133.94 0.542 3.33 0.539 0.946 -- -- -- 0.26 20.6 -- -- -- --
177.65 0.623 3.31 0.556 -- -0.277 -- -- 0.243 -- 69.04 7268 -- --
136.15 0.543 3.29 -- 1.01 -0.608 -- -- 0.428 20.7 81 6629 -- --
184.36 0.634 3.31 0.536 -- -- -- -- 0.251 -- -- -- -- --
141.6 0.557 3.35 -- 0.945 -- -- -- 0.2 20.7 -- -- -- --
185.79 0.637 3.32 -- -- -0.265 -- -- 0.182 -- 69.04 7268 -- --
191.95 0.647 3.32 -- -- -- -- -- 0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.46 humidity 80.0 1440 > th dose independent rect. 11 1
2 119.47 humidity 80.0 1440 < th dose independent rect. 11 1
3 119.58 wind 1.0 1440 > th dose independent rect. 10 1
5 119.91 wind 3.0 1440 < th dose dependent rect. 10 1
8 120.08 humidity 70.0 1440 > th dose dependent rect. 11 1
10 120.17 wind 1.0 1440 < th dose independent rect. 9 2
12 120.29 humidity 80.0 1440 < th dose independent rect. 8 5
15 120.40 radiation 1.0 270 < th dose dependent rect. 5 13
17 120.42 humidity 80.0 1440 > th dose independent rect. 6 6
21 120.48 humidity 80.0 1440 < th dose independent rect. 6 6
23 120.50 humidity 80.0 1440 > th dose independent rect. 8 4
29 120.56 humidity 70.0 1440 > th dose dependent rect. 2 10
35 120.59 wind 5.0 270 < th dose independent sin 18 NA
36 120.61 wind 5.0 270 < th dose independent rect. 10 14
55 120.75 wind 5.0 270 > th dose independent rect. 14 7
58 120.76 humidity 80.0 1440 > th dose dependent rect. 5 7
64 120.78 wind 5.0 270 > th dose independent rect. 14 11
72 120.81 wind 7.0 270 < th dose dependent rect. 10 14
93 120.92 radiation 1.0 270 < th dose dependent rect. 7 11
115 121.00 wind 5.0 270 < th dose independent rect. 13 10
134 121.09 humidity 70.0 10 > th dose independent rect. 10 10
136 121.09 precipitation 0.1 14400 > th dose dependent rect. 5 1
138 121.10 wind 5.0 270 > th dose independent sin 16 NA
141 121.12 wind 5.0 270 > th dose independent rect. 13 20
159 121.19 radiation 1.0 270 < th dose independent rect. 7 11
162 121.20 precipitation 0.1 14400 > th dose independent rect. 5 1
200 121.29 humidity 50.0 30 > th dose dependent rect. 16 20
201 121.29 humidity 60.0 30 > th dose dependent rect. 22 22
207 121.31 humidity 60.0 14400 < th dose independent rect. 16 1
208 121.31 humidity 50.0 10 > th dose dependent rect. 16 4
214 121.33 precipitation 0.1 4320 < th dose independent rect. 15 2
217 121.33 precipitation 0.1 4320 < th dose dependent rect. 15 2
225 121.35 wind 5.0 30 < th dose independent rect. 17 7
235 121.41 precipitation 0.1 14400 < th dose independent rect. 5 1
236 121.41 precipitation 0.1 1440 < th dose independent rect. 21 4
237 121.41 precipitation 0.1 14400 < th dose dependent rect. 5 1
239 121.41 precipitation 0.1 1440 < th dose dependent rect. 21 4
248 121.42 wind 7.0 10 < th dose dependent rect. 10 14
255 121.44 humidity 90.0 1440 < th dose independent rect. 5 3
257 121.45 precipitation 0.1 4320 > th dose independent rect. 15 2
261 121.46 humidity 60.0 14400 > th dose independent rect. 16 1
265 121.46 humidity 70.0 1440 > th dose dependent sin 5 NA
281 121.49 wind 3.0 270 > th dose dependent rect. 13 14
283 121.50 radiation 1.0 270 < th dose independent rect. 5 13
287 121.51 wind 5.0 10 < th dose independent rect. 12 12
304 121.55 wind 5.0 30 < th dose independent sin 16 NA
316 121.57 wind 7.0 10 < th dose dependent rect. 12 12
321 121.58 humidity 70.0 14400 < th dose independent rect. 18 15
343 121.61 wind 3.0 270 > th dose dependent rect. 14 7
358 121.64 precipitation 0.1 1440 > th dose independent rect. 5 2
369 121.66 humidity 70.0 14400 > th dose independent rect. 18 15
372 121.66 precipitation 0.1 1440 > th dose dependent rect. 5 2
373 121.66 precipitation 0.1 4320 > th dose dependent rect. 15 2
389 121.68 humidity 50.0 30 > th dose dependent rect. 14 22
396 121.70 wind 1.0 4320 > th dose independent rect. 17 1
409 121.73 humidity 50.0 270 > th dose independent rect. 16 1
416 121.73 humidity 60.0 10 > th dose dependent rect. 11 9
438 121.76 wind 3.0 270 > th dose dependent rect. 13 20
458 121.80 wind 3.0 270 > th dose dependent sin 16 NA
461 121.80 precipitation 0.1 1440 > th dose dependent rect. 5 8
464 121.81 humidity 50.0 1440 > th dose dependent rect. 6 2
467 121.81 humidity 50.0 30 > th dose dependent rect. 14 6
496 121.85 wind 9.0 270 < th dose dependent sin 18 NA
501 121.86 humidity 80.0 1440 < th dose independent sin 4 NA
503 121.86 precipitation 0.1 270 > th dose independent rect. 24 18
509 121.87 humidity 80.0 1440 > th dose independent sin 4 NA
524 121.88 precipitation 0.1 14400 > th dose dependent rect. 17 1
541 121.90 humidity 70.0 10 > th dose independent rect. 16 4
551 121.91 humidity 60.0 14400 < th dose independent rect. 12 5
567 121.93 precipitation 0.1 1440 > th dose dependent rect. 5 5
580 121.95 radiation 1.0 270 < th dose dependent rect. 13 5
583 121.96 wind 5.0 30 > th dose independent sin 14 NA
596 121.97 humidity 60.0 14400 < th dose independent rect. 11 21
612 121.98 wind 7.0 10 < th dose dependent rect. 10 16
617 121.99 humidity 60.0 14400 < th dose independent rect. 11 9
638 122.00 humidity 60.0 14400 > th dose independent rect. 15 17
640 122.00 wind 3.0 30 > th dose dependent sin 14 NA
661 122.01 humidity 70.0 14400 < th dose dependent rect. 16 1
693 122.03 wind 5.0 30 > th dose independent rect. 16 9
709 122.03 humidity 90.0 1440 < th dose dependent rect. 6 2
723 122.04 wind 1.0 30 > th dose dependent rect. 14 16
748 122.07 humidity 60.0 14400 < th dose independent sin 17 NA
771 122.07 wind 7.0 270 < th dose dependent rect. 13 10
788 122.09 humidity 70.0 10 > th dose independent rect. 22 22
809 122.10 humidity 80.0 90 > th dose independent rect. 22 22
836 122.11 wind 7.0 30 < th dose dependent rect. 17 7
840 122.11 humidity 70.0 14400 < th dose dependent rect. 12 21
841 122.12 humidity 60.0 14400 > th dose independent sin 16 NA
846 122.12 precipitation 0.1 1440 > th dose independent rect. 5 8
890 122.14 wind 3.0 30 < th dose independent rect. 10 14
899 122.15 wind 5.0 270 < th dose independent rect. 3 21
923 122.16 humidity 70.0 14400 < th dose dependent rect. 12 5
927 122.16 humidity 70.0 14400 < th dose dependent rect. 12 9
978 122.17 humidity 70.0 14400 < th dose dependent rect. 12 7
998 122.19 humidity 60.0 14400 < th dose independent rect. 12 1