Os09g0269400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0269400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.55 | 0.422 | 10.1 | 0.877 | 0.704 | 2.1 | 0.657 | 0.407 | -0.0128 | 7.61 | 25.43 | 1358 | -- | -- |
| 80.63 | 0.418 | 10.1 | 0.935 | 0.692 | 2.06 | 0.714 | -- | 0.00163 | 7.3 | 25.71 | 1245 | -- | -- |
| 81.74 | 0.421 | 10.1 | 0.882 | 0.705 | 2.12 | -- | 0.46 | -0.0183 | 7.69 | 25.3 | 1364 | -- | -- |
| 81.83 | 0.421 | 10.1 | 0.979 | 0.71 | 2.08 | -- | -- | 0.00661 | 7.84 | 25.7 | 1428 | -- | -- |
| 83.77 | 0.426 | 10.1 | 1.01 | -- | 2.32 | -- | -0.605 | -0.0643 | -- | 39.53 | 621 | -- | -- |
| 139.52 | 0.554 | 10.2 | 0.326 | 0.684 | -- | 0.654 | -- | -0.442 | 8.17 | -- | -- | -- | -- |
| 140.8 | 0.556 | 10.2 | 0.346 | 0.681 | -- | -- | -- | -0.442 | 8.29 | -- | -- | -- | -- |
| 83.94 | 0.427 | 10.1 | 0.913 | -- | 2.31 | -- | -- | -0.0729 | -- | 33.32 | 617 | -- | -- |
| 102.68 | 0.472 | 10.1 | -- | 0.658 | 1.65 | -- | -- | -0.177 | 7.25 | 25.83 | 1214 | -- | -- |
| 166.52 | 0.603 | 10.2 | 0.351 | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
| 143.95 | 0.561 | 10.2 | -- | 0.683 | -- | -- | -- | -0.481 | 8.25 | -- | -- | -- | -- |
| 103.36 | 0.473 | 10.1 | -- | -- | 1.98 | -- | -- | -0.234 | -- | 50.33 | 589 | -- | -- |
| 169.77 | 0.608 | 10.2 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 76.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 4 | 76.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 6 | 76.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 9 | 76.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 20 | 76.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 140 | 76.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 314 | 77.98 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 473 | 79.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 663 | 79.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 677 | 79.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 787 | 80.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 816 | 80.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 817 | 80.72 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 819 | 80.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 866 | 80.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 973 | 81.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |