Os09g0268500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0268500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.99 | 0.21 | -2800 | -6150 | 0.0168 | -1290000 | 0.209 | -2840000 | -0.0655 | 16.2 | 79.91 | 29 | -- | -- |
| 1349303794737.37 | 54100 | -2420 | -6170 | 231 | -1160000 | 35.7 | -- | 130 | 11.2 | 69.99 | 28 | -- | -- |
| 20.04 | 0.208 | -2800 | -6150 | 0.0299 | -1290000 | -- | -2840000 | -0.0668 | 11.7 | 79.91 | 30 | -- | -- |
| 1073427926910.85 | 48300 | 482 | -4300 | 15400 | -1040000 | -- | -- | 1010 | 12.4 | 71.64 | 33 | -- | -- |
| 20.09 | 0.209 | -2800 | -6150 | -- | -1290000 | -- | -2840000 | -0.0671 | -- | 79.91 | 33 | -- | -- |
| 34.37 | 0.275 | 2.93 | 0.0288 | 0.056 | -- | -0.128 | -- | -0.0849 | 10.8 | -- | -- | -- | -- |
| 34.42 | 0.275 | 2.93 | 0.0242 | 0.0581 | -- | -- | -- | -0.0849 | 11.9 | -- | -- | -- | -- |
| 3113.08 | 2.6 | 2.76 | 6.51 | -- | -3.45 | -- | -- | 4.92 | -- | 70.48 | 66 | -- | -- |
| 870777513695.83 | 43500 | 256 | -- | 14900 | -934000 | -- | -- | 268 | 13.1 | 69.98 | 28 | -- | -- |
| 34.63 | 0.275 | 2.93 | 0.0225 | -- | -- | -- | -- | -0.0856 | -- | -- | -- | -- | -- |
| 34.44 | 0.275 | 2.93 | -- | 0.0578 | -- | -- | -- | -0.0876 | 11.8 | -- | -- | -- | -- |
| 34.2 | 0.273 | 2.93 | -- | -- | 0.252 | -- | -- | -0.0829 | -- | 48.14 | 2631 | -- | -- |
| 34.65 | 0.275 | 2.93 | -- | -- | -- | -- | -- | -0.0881 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.48 | wind | 3 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 2 | 24.96 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 4 | 25.08 | wind | 1 | 30 | < th | dose independent | rect. | 13 | 3 |
| 136 | 25.62 | wind | 1 | 30 | < th | dose dependent | rect. | 8 | 7 |
| 190 | 26.02 | wind | 1 | 30 | < th | dose independent | rect. | 8 | 7 |
| 334 | 27.39 | wind | 1 | 30 | < th | dose independent | sin | 22 | NA |
| 357 | 27.53 | wind | 1 | 30 | < th | dose dependent | sin | 22 | NA |
| 410 | 28.23 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 634 | 30.61 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 1 |
| 647 | 30.73 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 10 | 1 |
| 731 | 31.09 | radiation | 40 | 30 | < th | dose independent | rect. | 12 | 2 |
| 802 | 31.39 | humidity | 70 | 10 | < th | dose independent | rect. | 13 | 1 |
| 804 | 31.39 | wind | 1 | 90 | > th | dose independent | rect. | 9 | 12 |
| 824 | 31.44 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 1 |
| 825 | 31.44 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 828 | 31.44 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 829 | 31.44 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 887 | 31.52 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 8 | 4 |
| 920 | 31.62 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 926 | 31.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 947 | 31.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 956 | 31.75 | temperature | 25 | 30 | > th | dose independent | rect. | 13 | 1 |