Os09g0266600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os09g0266600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.78 | 0.525 | 9.02 | 1.35 | 1.59 | 2.09 | 1.55 | 1.5 | -0.108 | 6.41 | 23.09 | 783 | -- | -- |
| 127.48 | 0.526 | 8.99 | 1.54 | 1.6 | 1.89 | 1.77 | -- | -0.0596 | 6.47 | 23.16 | 770 | -- | -- |
| 130.41 | 0.532 | 9.03 | 1.32 | 1.59 | 2.21 | -- | 1.97 | -0.127 | 6.36 | 22.9 | 784 | -- | -- |
| 135.15 | 0.541 | 8.99 | 1.56 | 1.6 | 1.84 | -- | -- | -0.0777 | 6.41 | 23.19 | 779 | -- | -- |
| 215.99 | 0.684 | 9.02 | 1.53 | -- | 2.68 | -- | 1.06 | 0.0186 | -- | 32.78 | 446 | -- | -- |
| 170.59 | 0.612 | 9.05 | 1.04 | 1.7 | -- | 1.76 | -- | -0.377 | 6.85 | -- | -- | -- | -- |
| 178.52 | 0.626 | 9.06 | 1.07 | 1.7 | -- | -- | -- | -0.381 | 6.82 | -- | -- | -- | -- |
| 216.86 | 0.686 | 9.01 | 1.7 | -- | 2.74 | -- | -- | 0.0388 | -- | 39.99 | 439 | -- | -- |
| 191.23 | 0.644 | 9.05 | -- | 1.65 | 1.11 | -- | -- | -0.35 | 6.54 | 23.31 | 724 | -- | -- |
| 330.53 | 0.85 | 9.09 | 1.11 | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
| 208.89 | 0.676 | 9.08 | -- | 1.72 | -- | -- | -- | -0.501 | 6.78 | -- | -- | -- | -- |
| 287.09 | 0.789 | 9.06 | -- | -- | 2.16 | -- | -- | -0.22 | -- | 62.55 | 414 | -- | -- |
| 363.09 | 0.889 | 9.12 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 11 | 116.34 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 15 | 116.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 24 | 116.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 32 | 117.05 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 33 | 117.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 35 | 117.12 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 63 | 117.71 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 13 |
| 85 | 118.18 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 203 | 120.91 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 226 | 121.33 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 268 | 122.00 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 365 | 123.39 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 605 | 126.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |