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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0266300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (0.0714) R2 : 0.697
β1 : 5.06 (0.26) R2dD : 0.304 R2D : 0.22
β2 : 0.794 (0.167) R2dC : 0.0153 R2C : -0.11
β3 : -2.26 (0.242) R2dE : 0.069 R2E : 0.0764
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.9 (0.905) R2dD*E : 0.135 R2D*E : 0.035
γ1 : 2.31 (0.146) R2dN8 : 0.24 R2N8 : 0.0433
σ : 1.23
deviance : 699.13
__
_____
C
peak time of C : 3.71
E
wheather : radiation
threshold : 19.58
memory length : 3726
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
699.69 1.24 5.53 5.05 0.8 -2.24 -0.475 -12 2.31 3.75 19.67 3733 15.1 17.1
933.36 1.42 5.75 5.66 0.733 -2.25 -0.418 -- 2.26 3.75 10.06 2857 15.2 17.4
699.13 1.23 5.53 5.06 0.794 -2.26 -- -11.9 2.31 3.71 19.58 3726 15.1 17
926.01 1.42 5.76 5.86 0.741 -2.34 -- -- 2.27 4.04 10.02 2880 15 17.7
729.16 1.26 5.51 5.06 -- -2.59 -- -11.8 2.35 -- 21.43 3745 15.3 16.8
1127.92 1.57 5.82 6.08 0.552 -- -0.674 -- 2.17 4.77 -- -- -- --
1129 1.57 5.81 6.08 0.552 -- -- -- 2.17 5.05 -- -- -- --
947.77 1.43 5.79 5.77 -- -2.08 -- -- 2.01 -- 19.94 2130 15.5 17.2
1328.92 1.7 6.11 -- 1.16 -4.96 -- -- 2.29 0.243 -0.01834 15055 15.9 14.3
1145 1.58 5.82 6.1 -- -- -- -- 2.18 -- -- -- -- --
2103.26 2.15 5.97 -- 0.662 -- -- -- 1.49 4.74 -- -- -- --
1211.72 1.62 5.84 -- -- -4.63 -- -- 2.86 -- -0.1222 24856 16.4 13.2
2126.46 2.15 5.97 -- -- -- -- -- 1.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 695.85 radiation 30 14400 > th dose independent rect. 7 1
16 698.84 wind 5 43200 < th dose independent rect. 6 1
17 699.48 wind 5 43200 > th dose independent rect. 6 1
19 701.49 radiation 10 14400 > th dose dependent rect. 17 13
20 701.65 radiation 10 14400 > th dose dependent rect. 17 1
34 706.21 radiation 20 14400 < th dose independent rect. 16 15
35 708.20 wind 3 43200 > th dose dependent rect. 3 11
38 709.45 radiation 10 14400 < th dose dependent rect. 18 5
39 709.55 radiation 10 14400 < th dose dependent rect. 18 1
44 710.14 wind 3 43200 > th dose dependent sin 5 NA
52 711.09 radiation 10 14400 < th dose dependent rect. 18 9
92 715.28 wind 3 43200 < th dose independent rect. 3 2
93 715.49 wind 3 43200 > th dose dependent rect. 5 2
99 715.82 wind 5 43200 < th dose independent sin 4 NA
109 716.95 wind 5 43200 > th dose independent sin 4 NA
112 717.39 wind 9 43200 > th dose dependent rect. 20 10
117 718.13 wind 3 43200 > th dose dependent rect. 20 18
128 719.69 wind 5 43200 < th dose independent rect. 2 13
138 720.23 wind 9 43200 > th dose independent rect. 19 11
141 720.51 wind 5 43200 > th dose independent rect. 2 13
142 720.62 radiation 20 14400 < th dose independent rect. 16 9
144 720.65 radiation 20 14400 < th dose independent rect. 16 11
148 720.71 radiation 20 14400 < th dose independent rect. 16 2
180 721.66 wind 9 43200 < th dose dependent rect. 3 9
192 722.11 wind 5 43200 > th dose independent rect. 24 16
205 722.79 wind 9 43200 < th dose independent rect. 19 11
208 722.84 radiation 1 14400 < th dose independent rect. 20 10
211 723.02 radiation 1 14400 < th dose independent rect. 4 2
212 723.03 radiation 1 14400 < th dose independent rect. 2 4
214 723.10 radiation 1 14400 > th dose independent rect. 4 2
233 723.23 wind 3 43200 > th dose dependent rect. 9 1
235 723.41 wind 7 43200 > th dose independent rect. 20 18
240 723.48 wind 7 43200 > th dose independent rect. 10 1
241 723.53 wind 5 43200 > th dose independent rect. 20 20
243 723.62 wind 5 43200 < th dose independent rect. 20 20
247 723.64 radiation 20 4320 > th dose dependent rect. 15 17
274 724.77 wind 9 43200 < th dose dependent rect. 8 2
316 725.24 wind 5 43200 < th dose independent rect. 5 8
352 725.87 humidity 70 14400 < th dose dependent rect. 18 1
356 725.93 wind 9 43200 < th dose dependent rect. 7 5
360 726.17 wind 5 43200 > th dose independent rect. 5 9
383 726.89 wind 5 43200 < th dose independent rect. 9 1
542 731.78 radiation 40 4320 < th dose dependent rect. 16 16
586 732.96 humidity 70 14400 < th dose dependent rect. 18 13
603 733.67 humidity 70 14400 < th dose dependent rect. 18 4
613 733.78 humidity 80 14400 > th dose independent rect. 17 3
739 737.31 wind 5 43200 < th dose dependent rect. 3 1
800 738.83 radiation 30 14400 < th dose independent rect. 7 1
892 741.34 wind 9 43200 > th dose independent rect. 19 5
921 741.84 wind 9 43200 < th dose independent rect. 19 5
956 742.39 humidity 80 14400 > th dose dependent rect. 21 2
979 742.62 wind 9 43200 < th dose dependent sin 6 NA