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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0264400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0658) R2 : 0.185
β1 : -2.77 (0.364) R2dD : 0.354 R2D : -0.218
β2 : 0.634 (0.137) R2dC : 0.0416 R2C : 0.0263
β3 : 0.83 (0.222) R2dE : 0.039 R2E : -0.0255
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.05 (1.24) R2dD*E : 0.312 R2D*E : -0.21
γ1 : -0.492 (0.157) R2dN8 : 0.0412 R2N8 : -0.0762
σ : 1.03
deviance : 485.91
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_____
C
peak time of C : 11.1
E
wheather : temperature
threshold : 21.69
memory length : 753
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.46
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
485.91 1.04 3.73 -2.77 0.621 0.822 0.205 -9.02 -0.479 11.1 21.66 725 1.25 --
537.58 1.08 3.49 -0.659 0.494 0.67 -1.12 -- 0.162 13 20.99 176 0.0142 --
485.91 1.03 3.73 -2.77 0.634 0.83 -- -9.05 -0.492 11.1 21.69 753 1.46 --
539.73 1.08 3.5 -0.647 0.547 0.621 -- -- 0.149 12.4 21.21 151 0.000308 --
505.53 1.05 3.74 -2.65 -- 1.24 -- -8.94 -0.525 -- 21.5 584 1.08 --
543.77 1.09 3.47 -0.523 0.76 -- -0.473 -- 0.236 11.6 -- -- -- --
544.66 1.09 3.47 -0.544 0.764 -- -- -- 0.233 11.4 -- -- -- --
541.88 1.08 3.51 -0.672 -- 1.03 -- -- 0.145 -- 2.065 635 0.297 --
549.61 1.09 3.47 -- 0.641 0.444 -- -- 0.242 11.7 23.7 133 0.139 --
581.27 1.13 3.49 -0.564 -- -- -- -- 0.225 -- -- -- -- --
552.45 1.1 3.46 -- 0.77 -- -- -- 0.294 11.5 -- -- -- --
551.94 1.09 3.48 -- -- 0.865 -- -- 0.266 -- -31.52 636 0.0145 --
589.66 1.13 3.47 -- -- -- -- -- 0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 484.40 temperature 20.0 720 > th dose dependent rect. 4 5
2 484.49 temperature 25.0 720 > th dose independent rect. 6 2
8 487.39 temperature 25.0 4320 > th dose independent rect. 7 1
12 487.78 temperature 25.0 4320 < th dose independent rect. 7 1
29 491.03 temperature 20.0 720 > th dose dependent sin 7 NA
31 491.25 temperature 20.0 720 > th dose dependent rect. 23 12
37 492.00 humidity 50.0 43200 < th dose independent rect. 15 17
52 492.61 humidity 50.0 43200 < th dose independent rect. 15 7
61 492.77 humidity 50.0 43200 > th dose independent rect. 15 17
71 493.07 humidity 50.0 43200 < th dose independent rect. 15 3
75 493.14 humidity 50.0 43200 > th dose independent rect. 15 2
80 493.19 humidity 50.0 43200 > th dose independent rect. 15 8
81 493.20 temperature 25.0 720 < th dose independent rect. 1 9
82 493.20 humidity 50.0 43200 > th dose independent rect. 15 10
120 495.01 temperature 25.0 1440 > th dose dependent rect. 18 1
122 495.19 temperature 25.0 270 < th dose independent rect. 24 12
158 496.48 precipitation 0.1 43200 > th dose independent rect. 8 1
159 496.48 precipitation 0.1 43200 > th dose dependent rect. 8 1
168 496.72 wind 1.0 43200 < th dose dependent rect. 20 5
172 496.88 precipitation 0.1 43200 < th dose independent rect. 8 1
173 496.88 precipitation 0.1 43200 < th dose dependent rect. 8 1
178 497.20 wind 1.0 43200 < th dose dependent rect. 20 2
181 497.41 temperature 25.0 270 > th dose independent sin 4 NA
189 497.60 humidity 70.0 43200 < th dose dependent rect. 17 5
193 497.73 radiation 10.0 43200 < th dose independent rect. 13 4
211 497.93 radiation 10.0 43200 < th dose independent rect. 14 1
224 498.21 humidity 50.0 43200 > th dose independent sin 12 NA
225 498.21 humidity 70.0 43200 < th dose dependent rect. 17 1
233 498.39 humidity 60.0 43200 > th dose independent rect. 12 10
245 498.58 wind 7.0 43200 > th dose independent rect. 21 1
246 498.59 temperature 25.0 270 < th dose independent sin 5 NA
259 498.74 humidity 60.0 43200 > th dose independent sin 17 NA
277 498.93 wind 1.0 43200 < th dose independent rect. 19 6
279 498.93 humidity 60.0 43200 < th dose independent rect. 12 10
291 499.03 wind 7.0 43200 < th dose independent rect. 21 1
297 499.05 wind 7.0 43200 > th dose dependent rect. 21 1
307 499.12 humidity 60.0 43200 > th dose independent rect. 10 6
320 499.21 humidity 60.0 43200 < th dose dependent rect. 16 17
324 499.24 wind 1.0 43200 < th dose dependent rect. 23 2
344 499.33 humidity 60.0 43200 > th dose independent rect. 12 23
356 499.39 wind 1.0 43200 > th dose independent rect. 19 6
365 499.41 humidity 60.0 43200 > th dose independent rect. 6 16
385 499.46 wind 1.0 43200 < th dose independent rect. 23 2
424 499.54 humidity 60.0 43200 > th dose independent rect. 6 10
436 499.56 humidity 60.0 43200 < th dose independent sin 16 NA
450 499.58 humidity 60.0 43200 > th dose independent rect. 17 23
457 499.60 radiation 40.0 43200 > th dose independent rect. 13 1
486 499.67 humidity 70.0 43200 < th dose independent rect. 17 4
506 499.70 wind 1.0 43200 > th dose independent rect. 19 3
510 499.71 humidity 60.0 43200 > th dose independent no NA NA
512 499.73 humidity 60.0 43200 < th dose independent rect. 12 4
516 499.73 humidity 60.0 43200 > th dose independent rect. 21 23
575 499.91 radiation 40.0 43200 > th dose dependent rect. 13 1
595 499.99 humidity 50.0 43200 < th dose independent sin 12 NA
639 500.12 humidity 60.0 43200 > th dose independent rect. 15 23
645 500.14 humidity 90.0 43200 > th dose dependent rect. 22 1
666 500.24 humidity 70.0 43200 < th dose independent rect. 17 1
681 500.27 radiation 10.0 43200 < th dose independent rect. 13 14
717 500.33 radiation 10.0 43200 < th dose independent rect. 11 14
738 500.38 humidity 90.0 43200 > th dose dependent rect. 21 3
766 500.48 radiation 10.0 43200 > th dose dependent rect. 13 1
770 500.49 humidity 90.0 43200 > th dose independent rect. 21 2
825 500.72 radiation 40.0 43200 < th dose independent rect. 13 1
843 500.82 wind 1.0 43200 < th dose independent rect. 20 2
846 500.82 radiation 20.0 43200 < th dose dependent rect. 12 5
895 500.96 humidity 70.0 43200 < th dose dependent rect. 15 20
898 500.97 temperature 20.0 1440 > th dose dependent rect. 3 1
920 501.07 humidity 70.0 43200 < th dose dependent sin 19 NA
922 501.07 humidity 70.0 43200 < th dose dependent rect. 8 13
951 501.13 radiation 40.0 43200 < th dose dependent rect. 13 2
964 501.17 humidity 70.0 43200 > th dose independent rect. 17 4
973 501.18 radiation 20.0 43200 < th dose dependent rect. 12 18
978 501.19 radiation 20.0 43200 < th dose dependent rect. 12 11
979 501.19 radiation 20.0 43200 < th dose dependent rect. 12 13
1000 501.24 temperature 25.0 1440 > th dose dependent rect. 16 17