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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0262000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0869) R2 : 0.186
β1 : -4.41 (0.598) R2dD : 0.673 R2D : -0.708
β2 : 0.832 (0.151) R2dC : 0.0546 R2C : -0.0312
β3 : -1.88 (0.267) R2dE : 0.221 R2E : -0.247
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.3 (1.94) R2dD*E : 0.803 R2D*E : -0.56
γ1 : -0.506 (0.174) R2dN8 : 0.0337 R2N8 : -0.101
σ : 1.18
deviance : 643.27
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_____
C
peak time of C : 10.9
E
wheather : temperature
threshold : 24.99
memory length : 4350
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.01
open length of G : 1.35

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
643.5 1.19 4.02 -4.46 0.828 -1.86 0.0265 15.2 -0.518 11 25 4344 6.98 1.35
704.18 1.24 3.72 -3.06 0.981 -2.88 0.0859 -- -0.621 11.4 20 23235 7.26 1.49
643.27 1.18 4.01 -4.41 0.832 -1.88 -- 15.3 -0.506 10.9 24.99 4350 7.01 1.35
682.63 1.22 3.71 -2.22 0.87 -2.28 -- -- -0.351 11.3 19.72 17934 7.11 0.0623
684.88 1.22 4.03 -4.39 -- -1.84 -- 15.3 -0.474 -- 25.09 4341 7.05 1.35
734.91 1.27 3.54 -0.00264 0.844 -- 0.0526 -- 0.374 11.1 -- -- -- --
734.92 1.27 3.54 -0.000414 0.843 -- -- -- 0.375 11.1 -- -- -- --
729.93 1.26 3.71 -2.08 -- -2.19 -- -- -0.297 -- 19.7 17465 7.28 0.0167
717.26 1.25 3.58 -- 0.884 -0.729 -- -- 0.203 11.1 19.2 10495 6.93 0.117
779.32 1.3 3.56 -0.0205 -- -- -- -- 0.368 -- -- -- -- --
734.92 1.27 3.54 -- 0.843 -- -- -- 0.375 11.1 -- -- -- --
764.42 1.29 3.58 -- -- -0.759 -- -- 0.23 -- 19.26 10494 6.97 0.124
779.34 1.3 3.56 -- -- -- -- -- 0.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 649.90 temperature 25 4320 < th dose independent rect. 7 1
2 650.10 temperature 25 4320 > th dose independent rect. 7 1
5 653.05 wind 1 43200 < th dose dependent rect. 20 6
11 656.44 radiation 30 43200 < th dose independent rect. 13 1
12 656.45 humidity 50 43200 > th dose independent rect. 16 2
14 657.01 humidity 50 43200 > th dose independent rect. 16 4
16 657.34 humidity 50 43200 > th dose independent rect. 16 13
19 657.42 humidity 50 43200 < th dose independent rect. 16 2
23 657.50 humidity 50 43200 > th dose independent rect. 16 10
31 657.77 humidity 50 43200 < th dose independent rect. 16 4
34 657.90 humidity 50 43200 < th dose independent rect. 16 18
41 658.89 humidity 50 43200 > th dose independent rect. 16 18
43 659.08 humidity 50 43200 < th dose independent rect. 16 12
58 659.58 radiation 20 43200 > th dose dependent rect. 13 1
66 660.41 wind 1 43200 < th dose dependent sin 15 NA
92 661.25 radiation 30 43200 < th dose independent rect. 12 13
99 661.26 wind 1 43200 < th dose independent rect. 20 6
103 661.26 radiation 30 43200 < th dose independent rect. 12 11
105 661.27 radiation 10 43200 < th dose independent rect. 16 1
109 661.35 radiation 30 43200 > th dose independent rect. 13 1
122 661.59 radiation 30 43200 < th dose independent rect. 8 17
189 661.75 radiation 30 43200 < th dose independent rect. 12 22
191 661.77 radiation 30 43200 < th dose independent sin 21 NA
195 661.81 radiation 30 43200 < th dose independent rect. 22 17
365 662.27 radiation 30 43200 < th dose independent no NA NA
720 663.17 radiation 30 43200 > th dose independent rect. 16 22
757 663.26 radiation 20 43200 > th dose dependent rect. 12 22
784 663.38 wind 1 43200 < th dose dependent rect. 24 1
786 663.39 radiation 30 43200 < th dose independent rect. 8 2
819 663.50 radiation 20 43200 > th dose dependent sin 18 NA
911 663.64 wind 1 43200 < th dose dependent rect. 15 13
950 663.72 radiation 40 43200 < th dose dependent rect. 12 1
967 663.74 radiation 30 43200 > th dose independent sin 1 NA