Os09g0260000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os09g0260000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.77 | 0.512 | 6.95 | 3.64 | 1.23 | -1.86 | -2.02 | 6.29 | 0.892 | 16.1 | 20.66 | 1759 | -- | -- |
| 149.21 | 0.569 | 7.16 | 2.29 | 1.17 | -1.95 | -1.68 | -- | 0.538 | 16.1 | 12.08 | 7553 | -- | -- |
| 130.12 | 0.531 | 6.97 | 3.56 | 1.22 | -1.84 | -- | 6.08 | 0.86 | 16.3 | 20.48 | 1770 | -- | -- |
| 158.81 | 0.587 | 7.13 | 2.26 | 1.07 | -1.99 | -- | -- | 0.559 | 16 | 9.79 | 7295 | -- | -- |
| 185.23 | 0.634 | 6.93 | 3.74 | -- | -1.92 | -- | 6.2 | 0.897 | -- | 19.23 | 2583 | -- | -- |
| 214.8 | 0.687 | 7.25 | 1.28 | 1.13 | -- | -1.9 | -- | 0.038 | 15.7 | -- | -- | -- | -- |
| 225.46 | 0.703 | 7.25 | 1.25 | 1.13 | -- | -- | -- | 0.0273 | 15.9 | -- | -- | -- | -- |
| 217.53 | 0.687 | 7.13 | 2.27 | -- | -2.13 | -- | -- | 0.548 | -- | 8.676 | 6993 | -- | -- |
| 235.68 | 0.715 | 7.24 | -- | 0.98 | -1.19 | -- | -- | 0.0741 | 16.4 | 16.49 | 1177 | -- | -- |
| 294.99 | 0.803 | 7.25 | 1.2 | -- | -- | -- | -- | -0.00278 | -- | -- | -- | -- | -- |
| 266.4 | 0.763 | 7.29 | -- | 1.1 | -- | -- | -- | -0.112 | 15.9 | -- | -- | -- | -- |
| 286.55 | 0.788 | 7.25 | -- | -- | -1.41 | -- | -- | 0.0767 | -- | 16.4 | 1186 | -- | -- |
| 332.97 | 0.852 | 7.28 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 3 | 104.15 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 23 | 110.23 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 34 | 110.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 44 | 111.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 50 | 112.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 52 | 112.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 78 | 114.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 81 | 114.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 87 | 114.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 94 | 114.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 97 | 114.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 127 | 115.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 128 | 115.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 140 | 115.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 152 | 116.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 189 | 116.68 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 195 | 116.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 205 | 116.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 250 | 117.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 251 | 117.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 252 | 117.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 312 | 117.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 339 | 118.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 406 | 118.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 469 | 118.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 481 | 119.03 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 507 | 119.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 522 | 119.32 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 604 | 119.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 608 | 119.72 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 609 | 119.72 | humidity | 80 | 43200 | > th | dose dependent | sin | 1 | NA |
| 626 | 119.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 634 | 119.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 656 | 119.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 675 | 120.00 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 679 | 120.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 699 | 120.13 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 703 | 120.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 718 | 120.25 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 734 | 120.31 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 735 | 120.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 764 | 120.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 786 | 120.52 | humidity | 90 | 43200 | > th | dose independent | sin | 3 | NA |
| 791 | 120.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 799 | 120.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 813 | 120.63 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 878 | 120.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 900 | 120.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 913 | 121.04 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 958 | 121.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |