Os09g0258800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0258800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.85	(0.0287)	R²	:	0.177
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.36	(0.544)	R²_dE	:	0.176	R²_E	:	0.174
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.057	(0.0605)	R²_dN8	:	0.00207	R²_N8	:	0.000754
σ	:	0.54
deviance	:	134.48
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.798
memory length	:	50
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	0.987
open length of G	:	0.363

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
133.88	0.544	2.86	-0.0772	0.137	7.67	-0.198	-26.6	0.0576	7.71	0.8686	77	0.0334	0.984
194.58	0.65	2.86	0.0989	0.236	6.97	-0.0216	--	0.061	7.53	0.7592	67	0.21	1.16
133.56	0.538	2.86	-0.0739	0.131	7.7	--	-26.5	0.0573	7.75	0.7998	76	0.0333	0.984
135.18	0.542	2.81	0.0172	0.118	6.52	--	--	0.109	7.4	0.6628	49	0.105	1.28
134.53	0.54	2.86	-0.0526	--	8.35	--	-28.8	0.0594	--	0.7315	76	0.0497	0.988
161.5	0.596	2.85	-0.0557	0.143	--	-0.484	--	0.0306	5.66	--	--	--	--
161.96	0.596	2.85	-0.0571	0.147	--	--	--	0.0331	6.75	--	--	--	--
134.66	0.54	2.87	0.00646	--	5.3	--	--	0.0273	--	0.779	51	1.03	0.35
134.27	0.54	2.85	--	0.149	6.19	--	--	0.0644	7.33	0.6009	51	0.194	1.2
163.09	0.597	2.85	-0.0538	--	--	--	--	0.0359	--	--	--	--	--
162.05	0.595	2.85	--	0.146	--	--	--	0.0394	6.77	--	--	--	--
134.48	0.54	2.85	--	--	5.36	--	--	0.057	--	0.798	50	0.987	0.363
163.16	0.596	2.85	--	--	--	--	--	0.0419	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	136.61	wind	1.0	90	< th	dose dependent	rect.	24	1
2	141.39	wind	1.0	90	< th	dose independent	rect.	24	1
3	146.16	radiation	1.0	1440	< th	dose independent	rect.	11	1
4	146.16	radiation	1.0	1440	< th	dose dependent	rect.	11	1
6	147.42	radiation	10.0	10	> th	dose dependent	rect.	17	14
7	147.73	radiation	10.0	10	> th	dose dependent	rect.	17	1
21	148.07	atmosphere	1005.0	30	< th	dose dependent	rect.	1	1
27	148.43	humidity	90.0	10	> th	dose dependent	rect.	24	3
31	148.82	radiation	10.0	10	> th	dose independent	rect.	17	14
40	149.60	radiation	10.0	10	> th	dose independent	rect.	17	1
57	150.42	humidity	90.0	30	> th	dose independent	rect.	24	3
60	150.58	humidity	50.0	10	< th	dose dependent	rect.	17	19
64	150.73	humidity	50.0	10	< th	dose dependent	rect.	17	1
87	151.17	temperature	20.0	30	> th	dose independent	rect.	1	2
88	151.18	humidity	50.0	10	< th	dose independent	rect.	17	19
95	151.32	humidity	50.0	10	< th	dose independent	rect.	17	1
126	151.90	atmosphere	1005.0	90	< th	dose dependent	rect.	7	1
131	152.05	wind	1.0	30	< th	dose independent	rect.	7	1
178	152.41	humidity	50.0	10	< th	dose dependent	sin	9	NA
185	152.57	temperature	10.0	1440	> th	dose independent	rect.	13	1
189	152.57	atmosphere	995.0	1440	> th	dose independent	rect.	13	1
193	152.57	temperature	10.0	1440	> th	dose independent	rect.	14	23
200	152.68	radiation	30.0	30	> th	dose independent	rect.	12	1
203	152.76	wind	1.0	90	< th	dose independent	rect.	7	20
206	152.81	wind	3.0	30	> th	dose independent	rect.	12	1
218	152.96	atmosphere	1010.0	30	< th	dose independent	rect.	12	1
219	152.97	temperature	25.0	30	> th	dose independent	rect.	12	1
222	153.00	temperature	25.0	30	> th	dose dependent	rect.	12	1
225	153.04	atmosphere	1005.0	10	< th	dose dependent	rect.	1	8
229	153.09	humidity	50.0	10	> th	dose independent	rect.	3	23
230	153.09	wind	1.0	30	> th	dose dependent	rect.	12	1
239	153.26	atmosphere	1005.0	30	> th	dose independent	rect.	12	1
240	153.27	radiation	10.0	30	> th	dose dependent	rect.	12	1
249	153.32	humidity	60.0	30	> th	dose independent	rect.	12	1
250	153.32	humidity	50.0	30	> th	dose dependent	rect.	12	1
254	153.38	temperature	25.0	10	< th	dose independent	rect.	2	1
257	153.40	temperature	10.0	10	> th	dose independent	rect.	2	1
260	153.40	humidity	50.0	10	> th	dose independent	rect.	2	1
263	153.40	atmosphere	995.0	10	> th	dose independent	rect.	2	1
264	153.40	atmosphere	1010.0	10	< th	dose independent	rect.	2	1
266	153.40	radiation	1.0	10	< th	dose independent	rect.	2	1
271	153.40	precipitation	0.1	10	< th	dose independent	rect.	2	1
272	153.40	temperature	10.0	10	> th	dose independent	rect.	3	23
273	153.40	radiation	1.0	10	< th	dose dependent	rect.	2	1
278	153.40	precipitation	0.1	10	< th	dose dependent	rect.	2	1
298	153.43	wind	1.0	30	> th	dose independent	rect.	2	1
301	153.46	humidity	50.0	10	< th	dose independent	sin	9	NA
308	153.50	temperature	30.0	10	< th	dose dependent	rect.	2	1
309	153.51	wind	9.0	10	< th	dose dependent	rect.	2	1
316	153.57	humidity	90.0	30	< th	dose independent	rect.	12	1
320	153.59	wind	7.0	30	< th	dose independent	rect.	12	1
327	153.66	temperature	10.0	10	> th	dose dependent	rect.	2	1
329	153.68	temperature	10.0	30	> th	dose independent	rect.	12	1
334	153.68	precipitation	0.1	30	< th	dose independent	rect.	12	1
335	153.68	temperature	10.0	30	> th	dose independent	rect.	13	23
336	153.68	precipitation	0.1	30	< th	dose dependent	rect.	12	1
343	153.72	atmosphere	995.0	30	> th	dose dependent	rect.	12	1
356	153.85	wind	1.0	1440	> th	dose independent	rect.	23	1
364	154.01	radiation	1.0	1440	< th	dose dependent	rect.	13	3
382	154.08	humidity	90.0	270	> th	dose dependent	rect.	22	3
395	154.13	atmosphere	1015.0	30	< th	dose dependent	rect.	12	1
396	154.14	temperature	30.0	30	< th	dose independent	rect.	12	1
408	154.23	humidity	50.0	10	< th	dose dependent	rect.	14	23
490	154.28	wind	3.0	90	< th	dose dependent	rect.	6	21
492	154.29	humidity	50.0	10	< th	dose dependent	no	NA	NA
647	154.30	wind	1.0	90	< th	dose dependent	rect.	14	13
669	154.36	temperature	30.0	10	< th	dose independent	rect.	3	22
670	154.36	atmosphere	995.0	10	> th	dose dependent	rect.	2	1
691	154.47	radiation	1.0	1440	> th	dose independent	rect.	8	8
692	154.47	radiation	1.0	1440	< th	dose independent	rect.	8	8
694	154.49	radiation	1.0	1440	< th	dose independent	rect.	13	2
719	154.50	wind	9.0	30	< th	dose dependent	rect.	12	1
728	154.51	humidity	50.0	10	> th	dose independent	sin	10	NA
734	154.53	wind	3.0	270	> th	dose independent	rect.	2	1
740	154.56	radiation	1.0	1440	> th	dose independent	rect.	8	5
763	154.61	humidity	90.0	90	> th	dose dependent	rect.	6	20
784	154.73	humidity	90.0	30	< th	dose dependent	rect.	12	1
814	154.84	wind	1.0	720	> th	dose independent	rect.	17	8
815	154.84	wind	3.0	270	> th	dose dependent	rect.	2	1
828	154.87	radiation	1.0	1440	> th	dose independent	rect.	13	2
830	154.87	atmosphere	995.0	10	> th	dose independent	rect.	3	23
839	154.89	wind	1.0	90	> th	dose independent	rect.	3	22
844	154.92	humidity	90.0	10	> th	dose dependent	rect.	22	5
871	155.05	wind	9.0	30	< th	dose independent	rect.	3	23
875	155.07	radiation	1.0	1440	> th	dose independent	rect.	11	1
890	155.10	humidity	90.0	720	> th	dose dependent	rect.	20	1
891	155.11	humidity	90.0	10	> th	dose independent	rect.	7	20
901	155.17	wind	9.0	30	< th	dose independent	rect.	13	23
942	155.32	radiation	1.0	1440	> th	dose independent	rect.	9	1
945	155.36	humidity	50.0	10	> th	dose independent	sin	14	NA
959	155.39	temperature	25.0	720	> th	dose dependent	rect.	2	1
972	155.44	wind	5.0	270	> th	dose dependent	rect.	2	5
977	155.46	wind	5.0	270	> th	dose dependent	rect.	2	3
984	155.48	atmosphere	1005.0	10	< th	dose independent	rect.	4	2
987	155.48	radiation	10.0	30	< th	dose independent	rect.	3	22
988	155.48	precipitation	0.1	30	< th	dose independent	rect.	3	22
993	155.48	precipitation	0.1	30	< th	dose dependent	rect.	3	22
994	155.49	wind	1.0	1440	< th	dose independent	rect.	23	1