Os09g0258600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L17-1.
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Os09g0258600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L17-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.27 | 0.418 | 12.4 | 0.826 | 0.396 | -0.574 | 0.569 | 0.404 | 0.212 | 19.1 | 19.9 | 2915 | -- | -- |
| 79.5 | 0.415 | 12.4 | 0.906 | 0.39 | -0.648 | 0.604 | -- | 0.218 | 19.1 | 19.82 | 2890 | -- | -- |
| 80.11 | 0.417 | 12.4 | 0.812 | 0.399 | -0.574 | -- | 0.437 | 0.213 | 19 | 20 | 2909 | -- | -- |
| 80.38 | 0.418 | 12.4 | 0.882 | 0.402 | -0.661 | -- | -- | 0.228 | 19 | 19.9 | 2890 | -- | -- |
| 88.41 | 0.438 | 12.4 | 0.804 | -- | -0.559 | -- | 0.441 | 0.207 | -- | 19.96 | 2966 | -- | -- |
| 87.36 | 0.438 | 12.3 | 1.25 | 0.382 | -- | 0.664 | -- | 0.388 | 19.2 | -- | -- | -- | -- |
| 88.54 | 0.441 | 12.3 | 1.23 | 0.384 | -- | -- | -- | 0.389 | 19.2 | -- | -- | -- | -- |
| 88.37 | 0.438 | 12.4 | 0.942 | -- | -0.658 | -- | -- | 0.227 | -- | 20.2 | 1738 | -- | -- |
| 84.77 | 0.429 | 12.4 | -- | 0.384 | -1.07 | -- | -- | 0.00789 | 19 | 18.08 | 47520 | -- | -- |
| 96.32 | 0.459 | 12.3 | 1.23 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 128.57 | 0.53 | 12.4 | -- | 0.372 | -- | -- | -- | 0.252 | 19.4 | -- | -- | -- | -- |
| 92.52 | 0.448 | 12.4 | -- | -- | -1.07 | -- | -- | 0.00312 | -- | 18.04 | 47520 | -- | -- |
| 135.93 | 0.544 | 12.4 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.48 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 75.88 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 3 | 76.13 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 8 | 76.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 9 | 76.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 10 | 76.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 16 | 76.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 22 | 76.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 24 | 76.83 | wind | 3 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 25 | 76.84 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 27 | 76.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 31 | 76.96 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 38 | 77.04 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 40 | 77.06 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 42 | 77.07 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 43 | 77.07 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 44 | 77.07 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 45 | 77.07 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 47 | 77.09 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 50 | 77.10 | wind | 3 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 72 | 77.21 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 98 | 77.34 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 122 | 77.43 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 135 | 77.47 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 140 | 77.47 | wind | 5 | 4320 | < th | dose dependent | rect. | 5 | 4 |
| 145 | 77.48 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 162 | 77.55 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 174 | 77.58 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 179 | 77.59 | wind | 5 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 192 | 77.64 | wind | 5 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 229 | 77.78 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 233 | 77.80 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 255 | 77.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 256 | 77.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 273 | 77.87 | wind | 5 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 286 | 77.90 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 317 | 77.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 324 | 77.96 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 357 | 78.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 387 | 78.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 427 | 78.22 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 443 | 78.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 457 | 78.28 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 462 | 78.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 464 | 78.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 472 | 78.31 | wind | 1 | 14400 | < th | dose dependent | sin | 8 | NA |
| 480 | 78.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 483 | 78.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 484 | 78.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 486 | 78.33 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 489 | 78.33 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 509 | 78.36 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 531 | 78.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 550 | 78.41 | wind | 1 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 574 | 78.43 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 15 |
| 618 | 78.48 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 667 | 78.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 668 | 78.50 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 674 | 78.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 697 | 78.53 | wind | 1 | 4320 | > th | dose dependent | rect. | 1 | 9 |
| 698 | 78.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 729 | 78.56 | wind | 1 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 778 | 78.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 786 | 78.62 | radiation | 40 | 270 | > th | dose dependent | sin | 11 | NA |
| 796 | 78.63 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 834 | 78.67 | humidity | 90 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 870 | 78.71 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 7 |
| 882 | 78.72 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 970 | 78.78 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |